ycfL:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YcfL

Synonyms

predicted protein[1], B1104[2][1], YcfL[2][1] , ECK1090, JW1090, b1104

Product description

predicted protein[2]; putative lipoprotein[3]

Probable lipoprotein, function unknown; Cys conserved[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0006974

response to DNA damage stimulus

PMID:11967071[5]

IEP: Inferred from Expression Pattern

P

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MRKGCFGLVS LVLLLLVGCR SHPEIPVNDE QSLVMESSLL AAGISAEKPF LSTSDIQPSA
SSTLYNERQE PVTVHYRFYW YDARGLEMHP LERPRSVTIP AHSAVTLYGS ANFLGAHKVR
LYLYL
Length

125

Mol. Wt

13.98 kDa

pI

7.5 (calculated)

Extinction coefficient

15,930 - 16,180 (calc based on 7 Y, 1 W, and 2 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

Domain

33..125

PF07233 Protein of unknown function (DUF1425)

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ycfL taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129067

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948539

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003731

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P75946

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6564

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13430

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948539

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003160

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3204

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Khil, PP & Camerini-Otero, RD (2002) Over 1000 genes are involved in the DNA damage response of Escherichia coli. Mol. Microbiol. 44 89-105 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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