yceG:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YceG

Synonyms

predicted aminodeoxychorismate lyase[1], B1097[2][1], YceG[2][1] , ECK1083, JW1083, b1097

Product description

predicted aminodeoxychorismate lyase[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

prs

PMID:16606699[5]

Experiment(s):EBI-1138852

Protein

oppD

PMID:16606699[5]

Experiment(s):EBI-1138852

Protein

pabC

PMID:16606699[5]

Experiment(s):EBI-1138852
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKKVLLIILL LLVVLGIAAG VGVWKVRHLA DSKLLIKEET IFTLKPGTGR LALGEQLYAD
KIINRPRVFQ WLLRIEPDLS HFKAGTYRFT PQMTVREMLK LLESGKEAQF PLRLVEGMRL
SDYLKQLREA PYIKHTLSDD KYATVAQALE LENPEWIEGW FWPDTWMYTA NTTDVALLKR
AHKKMVKAVD SAWEGRADGL PYKDKNQLVT MASIIEKETA VASERDKVAS VFINRLRIGM
RLQTDPTVIY GMGERYNGKL SRADLETPTA YNTYTITGLP PGAIATPGAD SLKAAAHPAK
TPYLYFVADG KGGHTFNTNL ASHNKSVQDY LKVLKEKNAQ
Length

340

Mol. Wt

38.248 kDa

pI

9.8 (calculated)

Extinction coefficient

59,360 (calc based on 14 Y, 7 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

40..330

PF02618 YceG-like family

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yceG taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129060

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945660

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003712

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P28306

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11494

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11494

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945660

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001450

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1457

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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