ycaQ:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

YcaQ

Synonyms

conserved protein[1], B0916[2][1], YcaQ[2][1] , ECK0907, JW0899, b0916

Product description

conserved protein[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
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Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

sapD

PMID:16606699[5]

Experiment(s):EBI-1138347

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1138347
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSLPHLSLAD ARNLHLAAQG LLNKPRRRAS LEDIPATISR MSLLQIDTIN IVARSPYLVL
FSRLGNYPAQ WLDESLARGE LMEYWAHEAC FMPRSDFRLI RHRMLAPEKM GWKYKDAWMQ
EHEAEIAQLI QHIHDKGPVR SADFEHPRKG ASGWWEWKPH KRHLEGLFTA GKVMVIERRN
FQRVYDLTHR VMPDWDDERD LVSQTEAEII MLDNSARSLG IFREQWLADY YRLKRPALAA
WREARAEQQQ IIAVHVEKLG NLWLHDDLLP LLERALAGKL TATHSAVLSP FDPVVWDRKR
AEQLFDFSYR LECYTPAPKR QYGYFVLPLL HRGQLVGRMD AKMHRQTGIL EVISLWLQEG
IKPTTTLQKG LRQAITDFAN WQQATRVTLG CCPQGLFTDC RTGWEIDPVA
Length

410

Mol. Wt

47.656 kDa

pI

8.7 (calculated)

Extinction coefficient

98,890 - 99,515 (calc based on 11 Y, 15 W, and 5 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

Domain

4..381

PF06224 Protein of unknown function (DUF1006)

PMID:19920124[6]

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Structure
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Structures

<beststructure> gene=ycaQ taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128883

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945524

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003117

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P75843

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6471

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13701

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945524

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003071

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3465

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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