ycaO:Gene Product(s)

From EcoliWiki
Jump to: navigation, search

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YcaO

Synonyms

conserved protein[1], B0905[2][1], YcaO[2][1] , ECK0896, JW0888, b0905

Product description

conserved hypothetical protein[2][3]

Function unknown[4]

EC number (for enzymes)


edit table

<protect></protect>

Notes

Function

[back to top]


<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rpmC

PMID:15690043[5]

Experiment(s):EBI-887352

Protein

alsA

PMID:15690043[5]

Experiment(s):EBI-887352

Protein

rpmC

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

pssA

PMID:19402753[6]

MALDI(Z-score):24.607053

Protein

alsA

PMID:19402753[6]

LCMS(ID Probability):99.6

edit table

</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
edit table

<protect></protect>

Notes

Structure and Physical Properties

[back to top]


<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MIFMTQTFIP GKDAALEDSI ARFQQKLSDL GFQIEEASWL NPVPNVWSVH IRDKECALCF
TNGKGATKKA ALASALGEYF ERLSTNYFFA DFWLGETIAN GPFVHYPNEK WFPLTENDDV
PEGLLDDRLR AFYDPENELT GSMLIDLQSG NEDRGICGLP FTRQSDNQTV YIPMNIIGNL
YVSNGMSAGN TRNEARVQGL SEVFERYVKN RIIAESISLP EIPADVLARY PAVVEAIETL
EAEGFPIFAY DGSLGGQYPV ICVVLFNPAN GTCFASFGAH PDFGVALERT VTELLQGRGL
KDLDVFTPPT FDDEEVAEHT NLETHFIDSS GLISWDLFKQ DADYPFVDWN FSGTTEEEFA
TLMAIFNKED KEVYIADYEH LGVYACRIIV PGMSDIYPAE DLWLANNSMG SHLRETILSL
PGSEWEKEDY LNLIEQLDEE GFDDFTRVRE LLGLATGSDN GWYTLRIGEL KAMLALAGGD
LEQALVWTEW TMEFNSSVFS PERANYYRCL QTLLLLAQEE DRQPLQYLNA FVRMYGADAV
EAASAAMSGE AAFYGLQPVD SDLHAFAAHQ SLLKAYEKLQ RAKAAFWAK
Length

589

Mol. Wt

66.044 kDa

pI

4.2 (calculated)

Extinction coefficient

100,270 - 101,145 (calc based on 23 Y, 12 W, and 7 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

58..392

PF02624 YcaO-like family

PMID:19920124[7]

edit table

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ycaO taxon=562,83333 </beststructure>

Models

View models at:

edit table
</protect>

Structure figures

<protect>

</protect>

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table

<protect></protect>

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111185

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945509

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003081

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P75838

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6468

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13699

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945509

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003068

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3463

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]




References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  6. ↑ 6.0 6.1 6.2 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=ycaO:Gene_Product(s)&oldid=1492887"