ycaI:Gene Product(s)
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
YcaI |
|---|---|
| Synonyms |
conserved inner membrane protein[1], YcaI[2][1], B0913[2][1] , ECK0904, JW5120, b0913 |
| Product description |
putative recombination protein with a metallo-hydrolase domain[2][3] Competence protein ComEC homolog, function unknown[4] |
| EC number (for enzymes) |
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| edit table |
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Notes
Function
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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0005886 |
plasma membrane |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0016020 |
membrane |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0016021 |
integral to membrane |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0016021 |
integral to membrane |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0016021 |
integral to membrane |
IEA: Inferred from Electronic Annotation |
SP_SL:SL-9909 |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0016787 |
hydrolase activity |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0030420 |
establishment of competence for transformation |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
| edit table |
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Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
| edit table |
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Notes
Structure and Physical Properties
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Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MPRGTQNSHQ TTAQQSCTLS INREGCMKIT TVGVCIISGI FPLLILPQLP GTLTLAFLTL FACVLAFIPV KTVRYIALTL LFFVWGILSA KQILWAGETL TGATQDAIVE ITATDGMTTH YGQITHLQGR RIFPASGLVM YGEYLPQAVC AGQQWSMKLK VRAVHGQLND GGFDSQRYAI AQHQPLTGRF LQASVIEPNC SLRAQYLASL QTTLQPYPWN AVILGLGMGE RLSVPKEIKN IMRDTGTAHL MAISGLHIAF AALLAAGLIR SGQIFLPGRW IHWQIPLIGG ICCAAFYAWL TGMQPPALRT MVALATWGML KLSGRQWSGW DVWICCLAAI LLMDPVAILS QSLWLSAAAV AALIFWYQWF PCPEWQLPPV LRAVVSLIHL QLGITLLLMP VQIVIFHGIS LTSFIANLLA IPLVTFITVP LILAAMVVHL SGPLILEQGL WFLADRSLAL LFWGLKSLPE GWINIAECWQ WLSFSPWFLL VVWRLNAWRT LPAMCVAGGL LMCWPLWQKP RPDEWQLYML DVGQGLAMVI ARNGKAILYD TGLAWPEGDS GQQLIIPWLH WHNLEPEGVI LSHEHLDHRG GLDSILHIWP MLWIRSPLNW EHHQPCVRGE AWQWQGLRFS AHWPLQGSND KGNNHSCVVK VDDGTNSILL TGDIEAPAEQ KMLSRYWQQV QATLLQVPHH GSNTSSSLPL IQRVNGKVAL ASASRYNAWR LPSNKVKHRY QLQGYQWIDT PHQGQTTVNF SAQGWRISSL REQILPRWYH QWFGVPVDNG |
| Length |
780 |
| Mol. Wt |
87.306 kDa |
| pI |
8.6 (calculated) |
| Extinction coefficient |
249,340 - 251,340 (calc based on 16 Y, 41 W, and 16 C residues) |
| edit table |
Domains/Motifs/Modification Sites
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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
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Structure
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Structure figures<protect> | ||||||
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.0 5.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
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