ybiW:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YbiW

Synonyms

predicted pyruvate formate lyase[1], B0823[2][1], YbiW[2][1], PflF[2][1] , ECK0813, JW0807, pflF, b0823

Product description

putative formate acetyltransferase[2]; predicted pyruvate formate lyase[3]

Pyruvate formate-lyase homolog, function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001150

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004184

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0006006

glucose metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004184

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001150

P

Seeded from EcoCyc (v14.0)

complete

GO:0008415

acyltransferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0012

F

Seeded from EcoCyc (v14.0)

complete

GO:0008861

formate C-acetyltransferase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004184

F

Seeded from EcoCyc (v14.0)

complete

GO:0008861

formate C-acetyltransferase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:2.3.1.54

F

Seeded from EcoCyc (v14.0)

complete

GO:0016740

transferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rtcB

PMID:16606699[5]

Experiment(s):EBI-1138116

Protein

nrdA

PMID:16606699[5]

Experiment(s):EBI-1138116

Protein

tig

PMID:16606699[5]

Experiment(s):EBI-1138116

Protein

ushA

PMID:16606699[5]

Experiment(s):EBI-1138116

Protein

supH

PMID:16606699[5]

Experiment(s):EBI-1138116
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MTTLKLDTLS DRIKAHKNAL VHIVKPPVCT ERAQHYTEMY QQHLDKPIPV RRALALAHHL
ANRTIWIKHD ELIIGNQASE VRAAPIFPEY TVSWIEKEID DLADRPGAGF AVSEENKRVL
HEVCPWWRGQ TVQDRCYGMF TDEQKGLLAT GIIKAEGNMT SGDAHLAVNF PLLLEKGLDG
LREEVAERRS RINLTVLEDL HGEQFLKAID IVLVAVSEHI ERFAALAREM AATETRESRR
DELLAMAENC DLIAHQPPQT FWQALQLCYF IQLILQIESN GHSVSFGRMD QYLYPYYRRD
VELNQTLDRE HAIEMLHSCW LKLLEVNKIR SGSHSKASAG SPLYQNVTIG GQNLVDGQPM
DAVNPLSYAI LESCGRLRST QPNLSVRYHA GMSNDFLDAC VQVIRCGFGM PAFNNDEIVI
PEFIKLGIEP QDAYDYAAIG CIETAVGGKW GYRCTGMSFI NFARVMLAAL EGGHDATSGK
VFLPQEKALS AGNFNNFDEV MDAWDTQIRY YTRKSIEIEY VVDTMLEENV HDILCSALVD
DCIERAKSIK QGGAKYDWVS GLQVGIANLG NSLAAVKKLV FEQGAIGQQQ LAAALADDFD
GLTHEQLRQR LINGAPKYGN DDDTVDTLLA RAYQTYIDEL KQYHNPRYGR GPVGGNYYAG
TSSISANVPF GAQTMATPDG RKAHTPLAEG ASPASGTDHL GPTAVIGSVG KLPTAAILGG
VLLNQKLNPA TLENESDKQK LMILLRTFFE VHKGWHIQYN IVSRETLLDA KKHPDQYRDL
VVRVAGYSAF FTALSPDAQD DIIARTEHML
Length

810

Mol. Wt

90.126 kDa

pI

5.9 (calculated)

Extinction coefficient

98,210 - 99,835 (calc based on 29 Y, 10 W, and 13 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

687..792

PF01228 Glycine radical

PMID:19920124[6]

Domain

6..671

PF02901 Pyruvate formate lyase

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ybiW taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128791

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945444

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002810

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P75793

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6426

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13328

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945444

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003026

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3112

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.0 6.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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