ybhK:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YbhK

Synonyms

predicted transferase with NAD(P)-binding Rossmann-fold domain[1], B0780[2][1], YbhK[2][1] , ECK0769, JW0763, b0780

Product description

predicted transferase with NAD(P)-binding Rossmann-fold domain[2][3]

Complements B. subtilis yvcK mutant, function unknown; Yvck, and perhaps YbhK, has a role in carbon metabolism[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

lpdA

PMID:15690043[5]

Experiment(s):EBI-886623, EBI-892986

Protein

rpoB

PMID:15690043[5]

Experiment(s):EBI-886623

Protein

nadE

PMID:16606699[6]

Experiment(s):EBI-1137943

Protein

hemG

PMID:16606699[6]

Experiment(s):EBI-1137943

Protein

htpG

PMID:16606699[6]

Experiment(s):EBI-1137943

Protein

groL

PMID:16606699[6]

Experiment(s):EBI-1137943

Protein

glgB

PMID:16606699[6]

Experiment(s):EBI-1137943

Protein

yiiQ

PMID:16606699[6]

Experiment(s):EBI-1137943

Protein

rpsD

PMID:16606699[6]

Experiment(s):EBI-1137943

Protein

aceE

PMID:15690043[5]

Experiment(s):EBI-892986

Protein

yfaW

PMID:15690043[5]

Experiment(s):EBI-892986

Protein

basS

PMID:15690043[5]

Experiment(s):EBI-892986

Protein

ccmH

PMID:15690043[5]

Experiment(s):EBI-892986

Protein

ftsK

PMID:15690043[5]

Experiment(s):EBI-892986

Protein

glgC

PMID:15690043[5]

Experiment(s):EBI-892986

Protein

gsk

PMID:15690043[5]

Experiment(s):EBI-892986

Protein

idnT

PMID:15690043[5]

Experiment(s):EBI-892986

Protein

narI

PMID:15690043[5]

Experiment(s):EBI-892986

Protein

rplC

PMID:15690043[5]

Experiment(s):EBI-892986

Protein

rplD

PMID:15690043[5]

Experiment(s):EBI-892986

Protein

rplM

PMID:15690043[5]

Experiment(s):EBI-892986

Protein

rplU

PMID:15690043[5]

Experiment(s):EBI-892986

Protein

rplV

PMID:15690043[5]

Experiment(s):EBI-892986

Protein

rplW

PMID:15690043[5]

Experiment(s):EBI-892986

Protein

rpsB

PMID:15690043[5]

Experiment(s):EBI-892986

Protein

rpsE

PMID:15690043[5]

Experiment(s):EBI-892986

Protein

rpsF

PMID:15690043[5]

Experiment(s):EBI-892986

Protein

rpsG

PMID:15690043[5]

Experiment(s):EBI-892986

Protein

secA

PMID:15690043[5]

Experiment(s):EBI-892986

Protein

valS

PMID:15690043[5]

Experiment(s):EBI-892986

Protein

ybhF

PMID:15690043[5]

Experiment(s):EBI-892986

Protein

yfdE

PMID:15690043[5]

Experiment(s):EBI-892986

Protein

ftsK

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

ccmH

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

ybhF

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

valS

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

basS

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

rhmD

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

gsk

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

narI

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

yfdE

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

glgC

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

idnT

PMID:19402753[7]

LCMS(ID Probability):99.0

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MRNRTLADLD RVVALGGGHG LGRVLSSLSS LGSRLTGIVT TTDNGGSTGR IRRSEGGIAW
GDMRNCLNQL ITEPSVASAM FEYRFGGNGE LSGHNLGNLM LKALDHLSVR PLEAINLIRN
LLKVDTHLIP MSEHPVDLMA IDDQGHEVYG EVNIDQLTTP IQELLLTPNV PATREAVHAI
NEADLIIIGP GSFYTSLMPI LLLKEIAQAL RRTPAPMVYI GNLGRELSLP AANLKLESKL
AIMEQYVGKK VIDAVIVGPK VDVSAVKERI VIQEVLEASD IPYRHDRQLL HNALEKALQA LG
Length

302

Mol. Wt

32.788 kDa

pI

6.4 (calculated)

Extinction coefficient

14,440 - 14,565 (calc based on 6 Y, 1 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

12..301

PF01933 Uncharacterised protein family UPF0052

PMID:19920124[8]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ybhK taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128748

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945390

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002661

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P75767

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6402

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13667

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945390

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003002

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3431

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 5.16 5.17 5.18 5.19 5.20 5.21 5.22 5.23 5.24 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  7. ↑ 7.00 7.01 7.02 7.03 7.04 7.05 7.06 7.07 7.08 7.09 7.10 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  8. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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