ybgQ:Gene Product(s)
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
YbgQ |
|---|---|
| Synonyms |
predicted outer membrane protein[1], B0718[2][1], YbgQ[2][1] , ECK0707, JW5099, b0718 |
| Product description |
predicted outer membrane protein[2][3] Putative outer membrane fimbrial subunit export usher protein; function unknown[4] |
| EC number (for enzymes) |
|
| edit table |
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Notes
Function
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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0005215 |
transporter activity |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0005886 |
plasma membrane |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0006810 |
transport |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0006810 |
transport |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0009279 |
cell outer membrane |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0016020 |
membrane |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0016020 |
membrane |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0016021 |
integral to membrane |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0016021 |
integral to membrane |
IEA: Inferred from Electronic Annotation |
SP_SL:SL-9909 |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
| edit table |
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Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
|
outer membrane |
From EcoCyc[3] |
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Notes
Structure and Physical Properties
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Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MDTVNIYRLS FVSCLVMAMP CAMAVEFNLN VLDKSMRDRI DISLLKEKGV IAPGEYFVSV AVNNNKISNG QKINWQKKGD KTIPCINDSL VDKFGLKPDI RQSLPQIDRC IDFSSRPEML FNFDQANQQL NISIPQAWLA WHSENWAPPS TWKEGVAGVL MDYNLFASSY RPQDGSSSTN LNAYGTAGIN AGAWRLRSDY QLNKTDSEDN HDQSGGISRT YLFRPLPQLG SKLTLGETDF SSNIFDGFSY TGAALASDDR MLPWELRGYA PQISGIAQTN ATVTISQSGR VIYQKKVPPG PFIIDDLNQS VQGTLDVKVT EEDGRVNNFQ VSAASTPFLT RQGQVRYKLA AGQPRPSMSH QTENETFFSN EVSWGMLSNT SLYGGLLISD DDYHSAAMGI GQNMLWLGAL SFDVTWASSH FDTQQDERGL SYRFNYSKQV DATNSTISLA AYRFSDRHFH SYANYLDHKY NDSDAQDEKQ TISLSVGQPI TPLNLNLYAN LLHQTWWNAD ASTTANITAG FNVDIGDWRD ISISTSFNTT HYEDKDRDNQ IYLSISLPFG NGGRVGYDMQ NSSHSTIHRM SWNDTLDERN SWGMSAGLQS DRPDNGAQVS GNYQHLSSAG EWDISGTYAA SDYSSVSSSW SGSFTATQYG AAFHRRSSTN EPRLMVSTDG VADIPVQGNL DYTNHFGIAV VPLISSYQPS TVAVNMNDLP DGVTVAENVI KETWIEGAIG YKSLASRSGK DVNVIIRNAS GQFPPLGADI RQDDSGISVG MVGEEGHAWL SGVAENQLFT VVWGEQSCII HLPERLEDTT KRLILPCH |
| Length |
818 |
| Mol. Wt |
90.444 kDa |
| pI |
4.9 (calculated) |
| Extinction coefficient |
154,700 - 155,450 (calc based on 30 Y, 20 W, and 6 C residues) |
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Domains/Motifs/Modification Sites
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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
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Structure
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Structure figures<protect> | ||||||
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
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