ybgO:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YbgO

Synonyms

predicted fimbrial-like adhesin protein[1], B0716[2][1], YbgO[2][1] , ECK0705, JW5098, b0716

Product description

predicted fimbrial-like adhesin protein[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
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Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MPFTSSGGEM SAGKGLLLVI CLLFLPLKSA MALNCYFGTS GGAVEKSEAI QPFAVPGNAK
PGDKIWESDD IKIPVYCDNN TNGNFESEHV YAWVNPYPGV QDRYYQLGVT YNGVDYDASL
GKSRIDTNQC IDSKNIDIYT PEQIIAMGWQ NKICSGDPAN IHMSRTFLAR MRLYVKIREM
PPHDYQSTLS DYIVVQFDGA GSVNEDPTAQ NLKYHITGLE NIRVLDCSVN FSISPETQVI
DFGKFNLLDI RRHTMSKTFS IKTTKSQNDQ CTDGFKVSSS FYTEETLVEE DKALLIGNGL
KLRLLDENAS PYTFNKYAEY ADFTSDMLVY EKTYTAELSS IPGTPIEAGP FDTVVLFKIN YN
Length

362

Mol. Wt

40.433 kDa

pI

4.7 (calculated)

Extinction coefficient

46,300 - 47,175 (calc based on 20 Y, 3 W, and 7 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-23

UniProt Manual:Signal Peptides

UniProt:P75748


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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ybgO taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111164

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947550

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002441

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P75748

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6385

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13311

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947550

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002985

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3095

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

Categories

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