ybgK:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YbgK

Synonyms

predicted enzyme subunit[1], B0712[2][1], YbgK[2][1] , ECK0701, JW0702, b0712

Product description

putative carboxylase[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

yhhI

PMID:16606699[5]

Experiment(s):EBI-1137764

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1137764

Protein

nei

PMID:16606699[5]

Experiment(s):EBI-1137764

Protein

guaA

PMID:16606699[5]

Experiment(s):EBI-1137764

Protein

rpmB

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

ybgI

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

ydfG

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

ybaS

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

ybgJ

PMID:19402753[6]

LCMS(ID Probability):99.6

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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MLKIIRAGMY TTVQDGGRHG FRQSGISHCG ALDMPALRIA NLLVGNDANA PALEITLGQL
TVEFETDGWF ALTGAGCEAR LDDNAVWTGW RLPMKAGQRL TLKRPQHGMR SYLAVAGGID
VPPVMGSCST DLKVGIGGLE GRLLKDGDRL PIGKSKRDSM EAQGVKQLLW GNRIRALPGP
EYHEFDRASQ DAFWRSPWQL SSQSNRMGYR LQGQILKRTT DRELLSHGLL PGVVQVPHNG
QPIVLMNDAQ TTGGYPRIAC IIEADMYHLA QIPLGQPIHF VQCSLEEALK ARQDQQRYFE
QLAWRLHNEN
Length

310

Mol. Wt

34.386 kDa

pI

8.4 (calculated)

Extinction coefficient

48,930 - 49,555 (calc based on 7 Y, 7 W, and 5 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

Domain

23..288

PF02626 Allophanate hydrolase subunit 2

PMID:19920124[7]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ybgK taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128687

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945317

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002428

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P75745

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6381

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13307

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945317

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002981

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3091

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 6.4 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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