ybgJ:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YbgJ

Synonyms

predicted enzyme subunit[1], B0711[2][1], YbgJ[2][1] , ECK0700, JW0701, b0711

Product description

putative carboxylase[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
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Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

zwf

PMID:16606699[5]

Experiment(s):EBI-1137759

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1137759

Protein

agaD

PMID:16606699[5]

Experiment(s):EBI-1137759
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MQRARCYLIG ETAVVLELEP PVTLASQKRI WRLAQRLVDM PNVVEAIPGM NNITVILRNP
ESLALDAIER LQRWWEESEA LEPESRFIEI PVVYGGAGGP DLAVVAAHCG LSEKQVVELH
SSVEYVVWFL GFQPGFPYLG SLPEQLHTPR RAEPRLLVPA GSVGIGGPQT GVYPLATPGG
WQLIGHTSLS LFDPARDEPI LLRPGDSVRF VPQKEGVC
Length

218

Mol. Wt

23.945 kDa

pI

5.1 (calculated)

Extinction coefficient

34,950 - 35,325 (calc based on 5 Y, 5 W, and 3 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

Domain

4..202

PF02682 Allophanate hydrolase subunit 1

PMID:19920124[6]

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Structure
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Structures

<beststructure> gene=ybgJ taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128686

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945311

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002426

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AAV4

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6380

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13306

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945311

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002980

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3090

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

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