ybgI:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YbgI

Synonyms

conserved metal-binding protein[1], B0710[2][1], YbgI[2][1] , ECK0699, JW0700, b0710

Product description

conserved metal-binding protein[2][3];

Component of conserved metal-binding protein[3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0046872

metal ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of conserved metal-binding protein

could be indirect

Protein

zapA

PMID:16606699[5]

Experiment(s):EBI-1137753

Protein

arcA

PMID:16606699[5]

Experiment(s):EBI-1137753

Protein

yqeI

PMID:16606699[5]

Experiment(s):EBI-1137753

Protein

stpA

PMID:16606699[5]

Experiment(s):EBI-1137753

Protein

skp

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

uvrD

PMID:19402753[6]

LCMS(ID Probability):99.4

Protein

slyD

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

lon

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

ompA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

fusA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

gyrB

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

tig

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

glyQ

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

infB

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

ibpA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

ndh

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

groS

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

narG

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

recA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

ftsY

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

mreB

PMID:19402753[6]

LCMS(ID Probability):99.6 MALDI(Z-score):22.511434

Protein

gyrA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

mukE

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

pstB

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

dnaJ

PMID:19402753[6]

LCMS(ID Probability):99.6 MALDI(Z-score):17.823912

Protein

phoE

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

miaB

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

ybiB

PMID:19402753[6]

LCMS(ID Probability):99.5 MALDI(Z-score):17.984699

Protein

ompC

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

ruvB

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

yehX

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

udk

PMID:19402753[6]

LCMS(ID Probability):99.4

Protein

ycgG

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

pdxB

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

malK

PMID:19402753[6]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKNTELEQLI NEKLNSAAIS DYAPNGLQVE GKETVQKIVT GVTASQALLD EAVRLGADAV
IVHHGYFWKG ESPVIRGMKR NRLKTLLAND INLYGWHLPL DAHPELGNNA QLAALLGITV
MGEIEPLVPW GELTMPVPGL ELASWIEARL GRKPLWCGDT GPEVVQRVAW CTGGGQSFID
SAARFGVDAF ITGEVSEQTI HSAREQGLHF YAAGHHATER GGIRALSEWL NENTDLDVTF
IDIPNPA
Length

247

Mol. Wt

26.892 kDa

pI

5.0 (calculated)

Extinction coefficient

44,460 - 44,710 (calc based on 4 Y, 7 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

5..238

PF01784 NIF3 (NGG1p interacting factor 3)

PMID:19920124[7]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ybgI taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128685

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945824

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002424

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AFP6

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6379

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13305

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945824

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002979

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3089

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 6.11 6.12 6.13 6.14 6.15 6.16 6.17 6.18 6.19 6.20 6.21 6.22 6.23 6.24 6.25 6.26 6.27 6.28 6.29 6.30 6.31 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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