ybeZ:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YbeZ

Synonyms

predicted protein with nucleoside triphosphate hydrolase domain[1], B0660[2][1], YbeZ[2][1], PhoL[2][1] , ECK0652, JW0657, phoL, b0660

Product description

predicted protein with nucleoside triphosphate hydrolase domain[2][3]

PhoH paralog, function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003714

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

ycfB

PMID:15690043[5]

Experiment(s):EBI-887500

Protein

aceE

PMID:15690043[5]

Experiment(s):EBI-887500

Protein

aceF

PMID:15690043[5]

Experiment(s):EBI-887500, EBI-893285

Protein

norV

PMID:15690043[5]

Experiment(s):EBI-887500

Protein

deaD

PMID:15690043[5]

Experiment(s):EBI-887500

Protein

fabZ

PMID:15690043[5]

Experiment(s):EBI-887500

Protein

lpdA

PMID:15690043[5]

Experiment(s):EBI-887500, EBI-893285

Protein

pssA

PMID:15690043[5]

Experiment(s):EBI-887500

Protein

rplA

PMID:15690043[5]

Experiment(s):EBI-887500, EBI-893285

Protein

rplB

PMID:15690043[5]

Experiment(s):EBI-887500

Protein

rplC

PMID:15690043[5]

Experiment(s):EBI-887500, EBI-893285

Protein

rplD

PMID:15690043[5]

Experiment(s):EBI-887500, EBI-893285

Protein

rplE

PMID:15690043[5]

Experiment(s):EBI-887500, EBI-893285

Protein

rplF

PMID:15690043[5]

Experiment(s):EBI-887500, EBI-893285

Protein

rplI

PMID:15690043[5]

Experiment(s):EBI-887500, EBI-893285

Protein

rplJ

PMID:15690043[5]

Experiment(s):EBI-887500

Protein

rplM

PMID:15690043[5]

Experiment(s):EBI-887500, EBI-893285

Protein

rplS

PMID:15690043[5]

Experiment(s):EBI-887500, EBI-893285

Protein

rplV

PMID:15690043[5]

Experiment(s):EBI-887500, EBI-893285

Protein

rplX

PMID:15690043[5]

Experiment(s):EBI-887500, EBI-893285

Protein

rpsA

PMID:15690043[5]

Experiment(s):EBI-887500

Protein

rpsB

PMID:15690043[5]

Experiment(s):EBI-887500, EBI-893285

Protein

rpsD

PMID:15690043[5]

Experiment(s):EBI-887500

Protein

rpsE

PMID:15690043[5]

Experiment(s):EBI-887500, EBI-893285

Protein

rpsG

PMID:15690043[5]

Experiment(s):EBI-887500, EBI-893285

Protein

rpsM

PMID:15690043[5]

Experiment(s):EBI-887500

Protein

secA

PMID:15690043[5]

Experiment(s):EBI-887500

Protein

rnr

PMID:15690043[5]

Experiment(s):EBI-887500

Protein

ycbY

PMID:15690043[5]

Experiment(s):EBI-887500

Protein

rluB

PMID:15690043[5]

Experiment(s):EBI-887500

Protein

yfcB

PMID:15690043[5]

Experiment(s):EBI-887500

Protein

yfiF

PMID:15690043[5]

Experiment(s):EBI-887500

Protein

fur

PMID:16606699[6]

Experiment(s):EBI-1137631

Protein

cyaA

PMID:16606699[6]

Experiment(s):EBI-1137631

Protein

malT

PMID:16606699[6]

Experiment(s):EBI-1137631

Protein

cusB

PMID:16606699[6]

Experiment(s):EBI-1137631

Protein

hupA

PMID:15690043[5]

Experiment(s):EBI-893285

Protein

rplL

PMID:15690043[5]

Experiment(s):EBI-893285

Protein

rplO

PMID:15690043[5]

Experiment(s):EBI-893285

Protein

rplP

PMID:15690043[5]

Experiment(s):EBI-893285

Protein

rplT

PMID:15690043[5]

Experiment(s):EBI-893285

Protein

rplU

PMID:15690043[5]

Experiment(s):EBI-893285

Protein

rplY

PMID:15690043[5]

Experiment(s):EBI-893285

Protein

rpmB

PMID:15690043[5]

Experiment(s):EBI-893285

Protein

rpmG

PMID:15690043[5]

Experiment(s):EBI-893285

Protein

rpsC

PMID:15690043[5]

Experiment(s):EBI-893285

Protein

rpsN

PMID:15690043[5]

Experiment(s):EBI-893285

Protein

rpsP

PMID:15690043[5]

Experiment(s):EBI-893285

Protein

rpsT

PMID:15690043[5]

Experiment(s):EBI-893285

Protein

uvrD

PMID:15690043[5]

Experiment(s):EBI-893285

Protein

ybcJ

PMID:15690043[5]

Experiment(s):EBI-893285

Protein

yhbY

PMID:15690043[5]

Experiment(s):EBI-893285

Protein

rpmG

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rfaD

PMID:19402753[7]

MALDI(Z-score):24.352310

Protein

rplO

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):7.301335

Protein

rplY

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplE

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):37.441737

Protein

rpsP

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplP

PMID:19402753[7]

LCMS(ID Probability):99.4 MALDI(Z-score):5.254930

Protein

rpsA

PMID:19402753[7]

MALDI(Z-score):27.592595

Protein

rplS

PMID:19402753[7]

LCMS(ID Probability):81.2 MALDI(Z-score):28.151356

Protein

rplT

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplU

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplI

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):33.498138

Protein

hupA

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

uvrD

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rpsM

PMID:19402753[7]

LCMS(ID Probability):90.2 MALDI(Z-score):26.902453

Protein

rpsN

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):2.830013

Protein

rplA

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):21.268957

Protein

rplX

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):20.747207

Protein

rplB

PMID:19402753[7]

MALDI(Z-score):33.863813

Protein

prmB

PMID:19402753[7]

MALDI(Z-score):25.226966

Protein

rpsC

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):2.935310

Protein

rplM

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):33.866547

Protein

rpsD

PMID:19402753[7]

MALDI(Z-score):39.178932

Protein

rplF

PMID:19402753[7]

LCMS(ID Probability):99.0 MALDI(Z-score):31.220102

Protein

yhbY

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplD

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):20.841996

Protein

pssA

PMID:19402753[7]

MALDI(Z-score):25.353822

Protein

ybcJ

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rnr

PMID:19402753[7]

MALDI(Z-score):27.338588

Protein

yfiF

PMID:19402753[7]

MALDI(Z-score):34.396572

Protein

deaD

PMID:19402753[7]

MALDI(Z-score):28.189812

Protein

rluB

PMID:19402753[7]

MALDI(Z-score):34.419817

Protein

rplL

PMID:19402753[7]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MFSFRRHTDK RNGLNIDTRE ITLEPADNAR LLSLCGPFDD NIKQLERRLG IEINRRDNHF
KLTGRPICVT AAADILRSLY VDTAPMRGQI QDIEPEQIHL AIKEARVLEQ SAESVPEYGK
AVNIKTKRGV IKPRTPNQAQ YIANILDHDI TFGVGPAGTG KTYLAVAAAV DALERQEIRR
ILLTRPAVEA GEKLGFLPGD LSQKVDPYLR PLYDALFEML GFEKVEKLIE RNVIEVAPLA
YMRGRTLNDA FIILDESQNT TIEQMKMFLT RIGFNSKAVI TGDVTQIDLP RNTKSGLRHA
IEVLADVEEI SFNFFHSEDV VRHPVVARIV NAYEAWEEAE QKRKAALAAE RKREEQEQK
Length

359

Mol. Wt

40.655 kDa

pI

6.7 (calculated)

Extinction coefficient

17,420 - 17,670 (calc based on 8 Y, 1 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

117..321

PF02562 PhoH-like protein

PMID:19920124[8]

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ybeZ taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:145698230

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948044

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002257

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A9K3

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6363

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13656

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948044

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002970

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3420

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 5.16 5.17 5.18 5.19 5.20 5.21 5.22 5.23 5.24 5.25 5.26 5.27 5.28 5.29 5.30 5.31 5.32 5.33 5.34 5.35 5.36 5.37 5.38 5.39 5.40 5.41 5.42 5.43 5.44 5.45 5.46 5.47 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  7. ↑ 7.00 7.01 7.02 7.03 7.04 7.05 7.06 7.07 7.08 7.09 7.10 7.11 7.12 7.13 7.14 7.15 7.16 7.17 7.18 7.19 7.20 7.21 7.22 7.23 7.24 7.25 7.26 7.27 7.28 7.29 7.30 7.31 7.32 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  8. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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