ybeY:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YbeY

Synonyms

conserved protein[1], B0659[2][1], YbeY[2][1] , ECK0651, JW0656, b0659

Product description

conserved protein[2][3]

Required for translation at 42 C, function unknown[4]; metal-binding heat shock protein[5]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0008233

peptidase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0645

F

Seeded from EcoCyc (v14.0)

complete

GO:0008237

metallopeptidase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00009

F

Seeded from EcoCyc (v14.0)

complete

GO:0008237

metallopeptidase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002036

F

Seeded from EcoCyc (v14.0)

complete

GO:0008237

metallopeptidase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0482

F

Seeded from EcoCyc (v14.0)

complete

GO:0008270

zinc ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002036

F

Seeded from EcoCyc (v14.0)

complete

GO:0008270

zinc ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0862

F

Seeded from EcoCyc (v14.0)

complete

GO:0016787

hydrolase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0378

F

Seeded from EcoCyc (v14.0)

complete

GO:0006412

translation

PMID:19181801[4]

IMP: Inferred from Mutant Phenotype

P

Required for translation at 42°C.

complete

GO:0016151

nickel ion binding

PMID:16511207[6]

IDA: Inferred from Direct Assay

F

X-ray fluorescence analysis of purified protein.

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

ybeZ

PMID:15690043[7]

Experiment(s):EBI-887617

Protein

rpsE

PMID:16606699[8]

Experiment(s):EBI-1137618

Protein

rof

PMID:16606699[8]

Experiment(s):EBI-1137618

Protein

yciA

PMID:16606699[8]

Experiment(s):EBI-1137618

Protein

rplB

PMID:16606699[8]

Experiment(s):EBI-1137618

Protein

rpsD

PMID:16606699[8]

Experiment(s):EBI-1137618

Protein

yfdP

PMID:16606699[8]

Experiment(s):EBI-1137618

Protein

yghW

PMID:16606699[8]

Experiment(s):EBI-1137618

Protein

rplP

PMID:16606699[8]

Experiment(s):EBI-1137618

Protein

yedS

PMID:16606699[8]

Experiment(s):EBI-1137618

Protein

rpsC

PMID:16606699[8]

Experiment(s):EBI-1137618

Protein

rplQ

PMID:16606699[8]

Experiment(s):EBI-1137618

Protein

typA

PMID:15690043[7]

Experiment(s):EBI-893352

Protein

typA

PMID:19402753[9]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSQVILDLQL ACEDNSGLPE ESQFQTWLNA VIPQFQEESE VTIRVVDTAE SHSLNLTYRG
KDKPTNVLSF PFEVPPGMEM SLLGDLVICR QVVEKEAQEQ GKPLEAHWAH MVVHGSLHLL
GYDHIEDDEA EEMEALETEI MLALGYEDPY IAEKE
Length

155

Mol. Wt

17.524 kDa

pI

4.1 (calculated)

Extinction coefficient

16,960 - 17,210 (calc based on 4 Y, 2 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

9..145

PF02130 Uncharacterized protein family UPF0054

PMID:19920124[10]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ybeY taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128642

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946430

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002255

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A898

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6362

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13655

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946430

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002969

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3419

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 Rasouly, A et al. (2009) YbeY, a heat shock protein involved in translation in Escherichia coli. J. Bacteriol. 191 2649-55 PubMed
  5. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  6. ↑ Zhan, C et al. (2005) The ybeY protein from Escherichia coli is a metalloprotein. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 61 959-63 PubMed
  7. ↑ 7.0 7.1 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  8. ↑ 8.00 8.01 8.02 8.03 8.04 8.05 8.06 8.07 8.08 8.09 8.10 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  9. ↑ Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  10. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

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