ybeQ:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YbeQ

Synonyms

conserved protein[1], B0644[2][1], YbeQ[2][1] , ECK0637, JW5091, b0644

Product description

conserved protein[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005488

binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011990

F

Seeded from EcoCyc (v14.0)

complete

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc

MIMIFTSSCC DNLSIDEIIE RAEKGDCEAQ YIVGFYYNRD SAIDSPDDEK AFYWLKLAAE
QGHCEAQYSL GQKYTEDKSR HKDNEQAIFW LKKAALQGHT FASNALGWTL DRGEAPNYKE
AVVWYQIAAE SGMSYAQNNL GWMYRNGNGV AKDYALAFFW YKQAALQGHS DAQNNLADLY
EDGKGVAQNK TLAAFWYLKS AQQGNRHAQF QIAWDYNAGE GVDQDYKQAM YWYLKAAAQG
SVGAYVNIGY MYKHGQGVEK DYQAAFEWFT KAAECNDATA WYNLAIMYHY GEGRPVDLRQ
ALDLYRKVQS SGTRDVSQEI RETEDLL
Length

327

Mol. Wt

37.275 kDa

pI

4.9 (calculated)

Extinction coefficient

99,240 - 99,865 (calc based on 26 Y, 11 W, and 5 C residues)


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

25..61

PF08238 Sel1 repeat

PMID:19920124[5]

Domain

62..97

PF08238 Sel1 repeat

PMID:19920124[5]

Domain

99..131

PF08238 Sel1 repeat

PMID:19920124[5]

Domain

132..167

PF08238 Sel1 repeat

PMID:19920124[5]

Domain

168..203

PF08238 Sel1 repeat

PMID:19920124[5]

Domain

204..239

PF08238 Sel1 repeat

PMID:19920124[5]

Domain

240..275

PF08238 Sel1 repeat

PMID:19920124[5]

Domain

276..310

PF08238 Sel1 repeat

PMID:19920124[5]

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ybeQ taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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</protect>

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111158

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945251

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002201

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P77234

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6351

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13647

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945251

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002958

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3411

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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