ybcM:Gene Product(s)
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
YbcM |
|---|---|
| Synonyms |
DLP12 prophage; predicted DNA-binding transcriptional regulator[1], B0546[2][1], YbcM[2][1] , ECK0537, JW0534, b0546 |
| Product description |
putative ARAC-type regulatory protein[2]; DLP12 prophage; predicted DNA-binding transcriptional regulator[3] AraC family transcriptional activator, function unknown, DLP12 prophage[4] |
| EC number (for enzymes) |
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| edit table |
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Notes
Function
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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0003677 |
DNA binding |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0003677 |
DNA binding |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0006350 |
transcription |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0045449 |
regulation of transcription |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0045449 |
regulation of transcription |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
yciN |
Experiment(s):EBI-1137127 | ||
|
Protein |
cysI |
Experiment(s):EBI-1137127 | ||
|
Protein |
sapF |
Experiment(s):EBI-1137127 | ||
|
Protein |
rplQ |
Experiment(s):EBI-1137127 | ||
|
Protein |
nrdI |
Experiment(s):EBI-1137127 | ||
|
Protein |
rplJ |
Experiment(s):EBI-1137127 | ||
|
Protein |
rpsR |
Experiment(s):EBI-1137127 | ||
|
Protein |
fur |
Experiment(s):EBI-1137127 | ||
|
Protein |
groL |
Experiment(s):EBI-1137127 | ||
|
Protein |
rpmB |
Experiment(s):EBI-1137127 | ||
|
Protein |
sapA |
Experiment(s):EBI-1137127 | ||
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Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
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Notes
Structure and Physical Properties
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Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MLARGKTNLK IEEIRMHKHH EIHRVKPLMP ALCRIRQGKK VINWETHTLT VDNNQIILFP CGYEFYIENY PEAGLYLAEM LYLPIDLIES FQKLYTVTDQ IRNKTSFFLP QNPELIYCWE QLKTSVSRGF STKIQEHLAM GVLLSLGVNH VNHLLLSYSK QSLISRCYNL LLSEPGTKWT ANKVARYLYI SVSTLHRRLA SEGVSFQSIL DDVRLNNALS AIQTTVKPIS EIARENGYKC PSRFTERFHN RFNITPREIR KASRE |
| Length |
265 |
| Mol. Wt |
30.841 kDa |
| pI |
9.8 (calculated) |
| Extinction coefficient |
34,380 - 35,005 (calc based on 12 Y, 3 W, and 5 C residues) |
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Domains/Motifs/Modification Sites
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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
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<motif_map/> |
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Structure
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Structure figures<protect> | ||||||
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
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