ybcK:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YbcK

Synonyms

DLP12 prophage; predicted recombinase[1], B0544[2][1], YbcK[2][1] , ECK0535, JW0532, b0544

Product description

hypothetical protein[2]; DLP12 prophage; predicted recombinase[3]

Function unknown, DLP12 prophage[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0000150

recombinase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006119

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006119

F

Seeded from EcoCyc (v14.0)

complete

GO:0006310

DNA recombination

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006119

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rplL

PMID:19402753[5]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKKAIAYMRF SSPGQMSGDS LNRQRRLIAE WLKVNSDYYL DTITYEDLGL SAFKGKHAQS
GAFSEFLDAI EHGYILPGTT LLVESLDRLS REKVGEAIER LKLILNHGID VITLCDNTVY
NIDSLNEPYS LIKAILIAQR ANEESEIKSS RVKLSWKKKR QDALESGTIM TASCPRWLSL
DDKRTAFVPD PDRVKTIELI FKLRMERRSL NAIAKYLNDH AVKNFSGKES AWGPSVIEKL
LANKALIGIC VPSYRARGKG ISEIAGYYPR VISDDLFYAV QEIRLAPFGI SNSSKNPMLI
NLLRTVMKCE ACGNTMIVHA VSGSLHGYYV CPMRRLHRCD RPSIKRDLVD YNIINELLFN
CSKIQPVENK KDANETLELK IIELQMKINN LIVALSVAPE VTAIAEKIRL LDKELRRASV
SLKTLKSKGV NSFSDFYAID LTSKNGRELC RTLAYKTFEK IIINTDNKTC DIYFMNGIVF
KHYPLMKVIS AQQAISALKY MVDGEIYF
Length

508

Mol. Wt

57.529 kDa

pI

9.4 (calculated)

Extinction coefficient

53,290 - 54,540 (calc based on 21 Y, 4 W, and 10 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

4..164

PF00239 Resolvase, N terminal domain

PMID:19920124[6]

Domain

191..286

PF07508 Recombinase

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ybcK taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128527

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945166

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001866

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P77698

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6300

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13627

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945166

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002908

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3392

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  6. ↑ 6.0 6.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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