ybcD:Gene Product(s)

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YbcD

Synonyms

YbcD[1], B4508[1]

Product description

DLP12 prophage; predicted replication protein fragment[1][2]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

yoaD

PMID:16606699[3]

Experiment(s):EBI-1137124
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

 




Length






Mol. Wt






pI






Extinction coefficient












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Domains/Motifs/Modification Sites





See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.







Type
Residues
Description
Notes
References






Domain





1..78





PF06992  Replication protein P







PMID:19920124[4] 







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<motif_map/>










Structure

See Help:Product_structure for help entering or editing information in this section of EcoliWiki.








Structures



<beststructure>
gene=ybcD
taxon=562,83333
</beststructure>






Models



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Structure figures


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Notes
Gene Product Resources
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 See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.










Resource type
Source
Notes/Reference





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Notes


Accessions in Other Databases


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See Help:Gene_accessions for help with entering information into the Gene Accessions table.







Database
Accession
Notes






EcoCyc





EcoCyc:





Escherichia coli str. K-12 substr. MG1655 








EcoGene





EcoGene:





Escherichia coli str. K-12 substr. MG1655 








RegulonDB





RegulonDB:ECK120026446





Escherichia coli str. K-12 substr. MG1655 








EchoBASE





EchoBASE:





Escherichia coli str. K-12 substr. MG1655 








ASAP





ASAP:





Escherichia coli str. K-12 substr. MG1655 







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Notes


Links


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References


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See Help:References for how to manage references in EcoliWiki.



    

  1. ↑ 1.0 1.1 1.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7  

    2. 

  2. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7  

    3. 

  3. ↑ Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91  PubMed 

    4. 

  4. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22  PubMed 

    5. 



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