ybaZ:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YbaZ

Synonyms

predicted methyltransferase[1], YbaZ[2][1], B0454[2][1] , ECK0448, JW0444, b0454

Product description

putative methyltransferase[2]; predicted methyltransferase[3]

Binds DNA with O(6)-meG or an abasic site; physiological role unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

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PMID:18084297[5]

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Missing: GO ID, evidence

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

ygcA

PMID:15690043[6]

Experiment(s):EBI-892264

Protein

ydgJ

PMID:15690043[6]

Experiment(s):EBI-892264

Protein

hupA

PMID:15690043[6]

Experiment(s):EBI-892264

Protein

lysS

PMID:15690043[6]

Experiment(s):EBI-892264

Protein

marA

PMID:15690043[6]

Experiment(s):EBI-892264

Protein

rplA

PMID:15690043[6]

Experiment(s):EBI-892264

Protein

rplJ

PMID:15690043[6]

Experiment(s):EBI-892264

Protein

rplL

PMID:15690043[6]

Experiment(s):EBI-892264

Protein

rpsB

PMID:15690043[6]

Experiment(s):EBI-892264

Protein

rpsJ

PMID:15690043[6]

Experiment(s):EBI-892264

Protein

ydgA

PMID:15690043[6]

Experiment(s):EBI-892264

Protein

rplD

PMID:16606699[7]

Experiment(s):EBI-1136740

Protein

dnaK

PMID:16606699[7]

Experiment(s):EBI-1136740

Protein

rplA

PMID:19402753[8]

LCMS(ID Probability):99.6

Protein

rplJ

PMID:19402753[8]

LCMS(ID Probability):99.6

Protein

lysS

PMID:19402753[8]

LCMS(ID Probability):99.6

Protein

ydgJ

PMID:19402753[8]

LCMS(ID Probability):99.6

Protein

ydgA

PMID:19402753[8]

LCMS(ID Probability):99.6

Protein

rumA

PMID:19402753[8]

LCMS(ID Probability):99.6

Protein

marA

PMID:19402753[8]

LCMS(ID Probability):99.6

Protein

rplL

PMID:19402753[8]

LCMS(ID Probability):99.6

</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc

MLVSCAMRLH SGVFPDYAEK LPQEEKMEKE DSFPQRVWQI VAAIPEGYVT TYGDVAKLAG
SPRAARQVGG VLKRLPEGST LPWHRVVNRH GTISLTGPDL QRQRQALLAE GVMVSGSGQI
DLQRYRWNY
Length

129

Mol. Wt

14.448 kDa

pI

9.5 (calculated)

Extinction coefficient

23,950 - 24,075 (calc based on 5 Y, 3 W, and 1 C residues)


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

31..115

PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain

PMID:19920124[9]

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ybaZ taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128439

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945094

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AFP2

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945094

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. Chen, CS et al. (2008) A proteome chip approach reveals new DNA damage recognition activities in Escherichia coli. Nat. Methods 5 69-74 PubMed
  6. 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  7. 7.0 7.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  8. 8.0 8.1 8.2 8.3 8.4 8.5 8.6 8.7 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  9. Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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