ybaE:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YbaE

Synonyms

predicted transporter subunit: periplasmic-binding component of ABC superfamily[1], B0445[2][1], YbaE[2][1] , ECK0439, JW0435, b0445

Product description

predicted transporter subunit: periplasmic-binding component of ABC superfamily[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005215

transporter activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000914

F

Seeded from EcoCyc (v14.0)

complete

GO:0006810

transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000914

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

ylbE

PMID:16606699[5]

Experiment(s):EBI-1136717

Protein

dnaK

PMID:16606699[5]

Experiment(s):EBI-1136717

Protein

gabT

PMID:16606699[5]

Experiment(s):EBI-1136717

Protein

appY

PMID:16606699[5]

Experiment(s):EBI-1136717
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MRLLNRLNQY QRLWQPSAGK PQTVTVSELA ERCFCSERHV RTLLRQAQEA GWLEWQAQSG
RGKRGQLRFL VTPESLRNAM MEQALETGKQ QDVLELAQLA PGELRTLLQP FMGGQWQNDT
PTLRIPYYRP LEPLQPGFLP GRAEQHLAGQ IFSGLTRFDN NTQRPIGDLA HHWETSTDGL
RWDFYLRSTL HWHNGDAVKA SHLHQRLLML LQLPALDQLF ISVKRIEVTH PQCLTFFLHR
PDYWLAHRLA SYCSHLAHPQ FPLIGTGPFR LTQFTAELVR LESHDYYHLR HPLLKAVEYW
ITPPLFEKDL GTSCRHPVQI TIGKPEELQR VSQVSSGISL GFCYLTLRKS PRLSLWQARK
VISIIHQSGL LQTLEVGENL ITASHALLPG WTIPHWQVPD EVKLPKTLTL VYHLPIELHT
MAERLQATLA AEGCELTIIF HNAKNWDDTT LQAHADLMMG DRLIGEAPEY TLEQWLRCDP
LWPHVFDAPA YAHLQSTLDA VQIMPDEENR FNALKAVFSQ LMTDATLTPL FNYHYRISAP
PGVNGVRLTP RGWFEFTEAW LPAPSQ
Length

566

Mol. Wt

64.992 kDa

pI

7.3 (calculated)

Extinction coefficient

115,850 - 116,850 (calc based on 15 Y, 17 W, and 8 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

164..306

PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ybaE taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128430

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:949093

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001542

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P46890

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG13217

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13217

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:949093

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002431

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3008

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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