yaiW:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

YaiW

Synonyms

predicted DNA-binding transcriptional regulator[1], B0378[2][1], YaiW[2][1] , ECK0373, JW0369, b0378

Product description

predicted DNA-binding transcriptional regulator[2][3]

Required for swarming phenotype, probable lipoprotein; Cys conserved[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
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Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSRVNPLSSL SLLAVLVLAG CSSQAPQPLK KGEKAIDVAS VVRQKMPASV KDRDAWAKDL
ATTFESQGLA PTLENVCSVL AVAQQESNYQ ADPAVPGLSK IAWQEIDRRA ERMHIPAFLV
HTALKIKSPN GKSYSERLDS VRTEKQLSAI FDDLINMVPM GQTLFGSLNP VRTGGPMQVS
IAFAEQHTKG YPWKMDGTVR QEVFSRRGGL WFGTYHLLNY PASYSAPIYR FADFNAGWYA
SRNAAFQNAV SKASGVKLAL DGDLIRYDSK EPGKTELATR KLAAKLGMSD SEIRRQLEKG
DSFSFEETAL YKKVYQLAET KTGKSLPREM LPGIQLESPK ITRNLTTAWF AKRVDERRAR CMKQ
Length

364

Mol. Wt

40.415 kDa

pI

10.0 (calculated)

Extinction coefficient

49,390 - 49,765 (calc based on 11 Y, 6 W, and 3 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

Domain

48..364

PF07759 Protein of unknown function (DUF1615)

PMID:19920124[5]

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Structure
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Structures

<beststructure> gene=yaiW taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128363

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945038

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001299

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P77562

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6227

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13608

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945038

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002840

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3375

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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