yaiV:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

YaiV

Synonyms

predicted DNA-binding transcriptional regulator[1], YaiV[2][1], B0375[2][1] , ECK0370, JW0366, b0375

Product description

predicted DNA-binding transcriptional regulator[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

cysI

PMID:16606699[5]

Experiment(s):EBI-1136399

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1136399
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MPVKDLTGIT AKDAQMLSVV KPLQEFGKLD KCLSRYGTRF EFNNEKQVIF SSDVNNEDTF
VILEGVISLR REENVLIGIT QAPYIMGLAD GLMKNDIPYK LISEGNCTGY HLPAKQTITL
IEQNQLWRDA FYWLAWQNRI LELRDVQLIG HNSYEQIRAT LLSMIDWNEE LRSRIGVMNY
IHQRTRISRS VVAEVLAALR KGGYIEMNKG KLVAINRLPS EY
Length

222

Mol. Wt

25.526 kDa

pI

8.1 (calculated)

Extinction coefficient

35,410 - 35,660 (calc based on 9 Y, 4 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yaiV taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:226524702

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946902

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001290

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AAP5

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6226

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13607

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946902

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002839

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3374

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

Categories

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