yaiO:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YaiO

Synonyms

predicted protein[1], B0358[2][1], YaiO[2][1] , ECK0355, JW0349, b0358

Product description

outer membrane protein[2][3]

Outer membrane protein, function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
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Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes

outer membrane


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MIKRTLLAAA IFSALPAYAG LTSITAGYDF TDYSGDHGNR NLAYAELVAK VENATLLFNL
SQGRRDYETE HFNATRGQGA VWYKWNNWLT TRTGIAFADN TPVFARQDFR QDINLALLPK
TLFTTGYRYT KYYDDVEVDA WQGGVSLYTG PVITSYRYTH YDSSDAGGSY SNMISVRLND
PRGTGYTQLW LSRGTGAYTY DWTPETRYGS MKSVSLQRIQ PLTEQLNLGL TAGKVWYDTP
TDDFNGLQLA ARLTWKF
Length

257

Mol. Wt

29.041 kDa

pI

7.5 (calculated)

Extinction coefficient

73,800 (calc based on 20 Y, 8 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yaiO taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128343

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945014

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001230

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:Q47534

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6210

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13297

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945014

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002824

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3082

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

Categories

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