yaiL:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

YaiL

Synonyms

nucleoprotein/polynucleotide-associated enzyme[1], B0354[2][1], YaiL[2][1] , ECK0351, JW0345, b0354

Product description

nucleoprotein/polynucleotide-associated enzyme[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

wbbJ

PMID:16606699[5]

Experiment(s):EBI-1136353

Protein

nadE

PMID:16606699[5]

Experiment(s):EBI-1136353

Protein

tatE

PMID:16606699[5]

Experiment(s):EBI-1136353
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MRRCLTCLIR QGRKGLHPNT PTAFTGILAK NYSAGLETKM AKLTLQEQLL KAGLVTSKKA
AKVERTAKKS RVQAREARAA VEENKKAQLE RDKQLSEQQK QAALAKEYKA QVKQLIEMNR
ITIANGDIGF NFTDGNLIKK IFVDKLTQAQ LINGRLAIAR LLVDNNSEGE YAIIPASVAD
KIAQRDASSI VLHSALSAEE QDEDDPYADF KVPDDLMW
Length

218

Mol. Wt

24.223 kDa

pI

9.7 (calculated)

Extinction coefficient

11,460 - 11,710 (calc based on 4 Y, 1 W, and 2 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

Domain

5..179

PF09831 Uncharacterized protein conserved in bacteria (DUF2058)

PMID:19920124[6]

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Structure
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Structures

<beststructure> gene=yaiL taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111118

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:944993

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001216

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P51024

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6207

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13294

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:944993

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002821

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3079

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

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