yahF:Gene Product(s)

From EcoliWiki
Jump to: navigation, search

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YahF

Synonyms

predicted acyl-CoA synthetase with NAD(P)-binding domain and succinyl-CoA synthetase domain[1], B0320[2][1], YahF[2][1] , ECK0318, JW0312, b0320

Product description

predicted acyl-CoA synthetase with NAD(P)-binding domain and succinyl-CoA synthetase domain[2][3]

Function unknown[4]

EC number (for enzymes)


<protect></protect>

Notes

Function

[back to top]


<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005811

F

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005811

P

Seeded from EcoCyc (v14.0)

complete

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

prs

PMID:16606699[5]

Experiment(s):EBI-1136218

Protein

dnaK

PMID:16606699[5]

Experiment(s):EBI-1136218

Protein

glpC

PMID:16606699[5]

Experiment(s):EBI-1136218

</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

<protect></protect>

Notes

Structure and Physical Properties

[back to top]


<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc

MSVKIVIKPN TYFDSVSLMS ISTRANKLDG VEQAFVAMAT EMNKGVLKNL GLLTPELEQA
KNGDLMIVIN GKSGADNEQL LVEIEELFNT KAQSGSHEAR YATIGSAKKH IPESNLAVIS
VNGLFAAREA RQALQNDLNV MLFSDNVSVE DELALKQLAH EKGLLMMGPD CGTAIINGAA
LCFGNAVRRG NIGIVGASGT GSQELSVRIH EFGGGVSQLI GTGGRDLSEK IGGLMMLDAI
GMLENDPQTE IIALISKPPA PAVARKVLER ARACRKPVVV CFLDRGETPV DEQGLQFARG
TKEAALKAVM LSGVKQENLD LHTLNQPLIA DVRARLQPQQ KYIRGLFCGG TLCDETMFAV
MEKHGDVYSN IQPDPEFRLK DINRSIKHTF LDFGDDDFTN GKPHPMIDPT NRISRLIEEA
RDPEVAVIVM DFVLGFGSHE DPVGSTIETI KEAKAIAAAE GRELIILAYV LGTDLDTPSL
EQQSQMLLDA GVILASSSTN TGLLAREFIC KGEEA
Length

515

Mol. Wt

55.581 kDa

pI

5.0 (calculated)

Extinction coefficient

7,450 - 8,325 (calc based on 5 Y, 0 W, and 7 C residues)


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

187..283

PF02629 CoA binding domain

PMID:19920124[6]

Domain

346..508

PF00549 CoA-ligase

PMID:19920124[6]

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yahF taxon=562,83333 </beststructure>

Models

View models at:

</protect>

Structure figures

<protect>

</protect>

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference

<protect></protect>

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128305

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947298

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001099

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P77187

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6185

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13590

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947298

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002804

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3360

Escherichia coli str. K-12 substr. MG1655

<protect></protect>

Notes

Links

[back to top]




References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. 5.0 5.1 5.2 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. 6.0 6.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

[back to top]