yafZ:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YafZ

Synonyms

CP4-6 prophage; conserved protein[1], B0252[2][1], YafZ[2][1] , ECK0254, JW0242, b0252

Product description

hypothetical protein[2]; CP4-6 prophage; conserved protein[3]

Function unknown, CP4-6 putative prophage remnant[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1136017

Protein

dnaE

PMID:16606699[5]

Experiment(s):EBI-1136017

Protein

yfjQ

PMID:16606699[5]

Experiment(s):EBI-1136017, EBI-1143558

Protein

groS

PMID:19402753[6]

LCMS(ID Probability):99.6 MALDI(Z-score):28.371672

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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MRSLLMTRLA SRFGAANLIR RDRPLTREEL FRVVPSVFSE DKHESRSERY TYIPTISLLD
SLQREGFQPF FACQTRVRDP GRREHTKHML RLRREGQITG KQVPEIILLN SHDGTSSYQM
LPGLFRAVCQ NGLVCGESFG EVRVPHKGDV VSQVIEGAYE VLGIFDRVEE KRDAMQSLLL
PPPAQQALAK AALTYRFGED HQPVTESQIL SPRRWQDESN DLWTTYQRIQ ENLIKGGLSG
RNAKGGRSHT RAVRGIDGDV KLNRALWVMA EALLTQLQ
Length

278

Mol. Wt

31.652 kDa

pI

9.8 (calculated)

Extinction coefficient

25,440 - 25,815 (calc based on 6 Y, 3 W, and 3 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

37..262

PF06067 Domain of unknown function (DUF932)

PMID:19920124[7]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yafZ taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111102

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945373

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000856

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P77206

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6127

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13338

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945373

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002747

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3122

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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