yafP:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YafP

Synonyms

predicted acyltransferase with acyl-CoA N-acyltransferase domain[1], YafP[2][1], B0234[2][1] , ECK0235, JW0224, b0234

Product description

putative acyltransferase with a possible role in spontaneous mutagenesis[2]; predicted acyltransferase with acyl-CoA N-acyltransferase domain[3]

Putative acetyltransferase; lexA regulon[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0008080

N-acetyltransferase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000182

F

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000182

P

Seeded from EcoCyc (v14.0)

complete

GO:0008415

acyltransferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0012

F

Seeded from EcoCyc (v14.0)

complete

GO:0016740

transferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rpsC

PMID:16606699[5]

Experiment(s):EBI-1135971

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1135971

Protein

nadE

PMID:16606699[5]

Experiment(s):EBI-1135971

Protein

rplB

PMID:16606699[5]

Experiment(s):EBI-1135971

Protein

rpsB

PMID:16606699[5]

Experiment(s):EBI-1135971

Protein

ycgE

PMID:16606699[5]

Experiment(s):EBI-1135971
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MNNIQIRNYQ PGDFQQLCAI FIRAVTMTAS QHYSPQQISA WAQIDESRWK EKLAKSQVWV
AIINAQPVGF ISRIEHYIDM LFVDPEYTRR GVASALLKPL IKSESELTVD ASITAKPFFE
RYGFQTVKQQ RVECRGAWFT NFYMRYKPQH
Length

150

Mol. Wt

17.554 kDa

pI

10.1 (calculated)

Extinction coefficient

32,430 - 32,680 (calc based on 7 Y, 4 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

36..125

PF00583 Acetyltransferase (GNAT) family

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yafP taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128220

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:944912

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000801

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:Q47158

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6118

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13153

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:944912

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002738

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2947

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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