yadE:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YadE

Synonyms

predicted polysaccharide deacetylase lipoprotein[1], B0130[2][1], YadE[2][1] , ECK0129, JW0126, b0130

Product description

predicted polysaccharide deacetylase lipoprotein[2][3]

Polysaccharide deacetylase-like protein, function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011330

F

Seeded from EcoCyc (v14.0)

complete

GO:0005975

carbohydrate metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002509

P

Seeded from EcoCyc (v14.0)

complete

GO:0005975

carbohydrate metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011330

P

Seeded from EcoCyc (v14.0)

complete

GO:0016810

hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002509

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MYKQAVILLL MLFTASVSAA LPARYMQTIE NAAVWAQIGD KMVTVGNIRA GQIIAVEPTA
ASYYAFNFGF GKGFIDKGHL EPVQGRQKVE DGLGDLNKPL SNQNLVTWKD TPVYNAPSAG
SAPFGVLADN LRYPILHKLK DRLNQTWYQI RIGDRLAYIS ALDAQPDNGL SVLTYHHILR
DEENTRFRHT STTTSVRAFN NQMAWLRDRG YATLSMVQLE GYVKNKINLP ARAVVITFDD
GLKSVSRYAY PVLKQYGMKA TAFIVTSRIK RHPQKWNPKS LQFMSVSELN EIRDVFDFQS
HTHFLHRVDG YRRPILLSRS EHNILFDFAR SRRALAQFNP HVWYLSYPFG GFNDNAVKAA
NDAGFHLAVT TMKGKVKPGD NPLLLKRLYI LRTDSLETMS RLVSNQPQG
Length

409

Mol. Wt

46.316 kDa

pI

10.2 (calculated)

Extinction coefficient

59,820 (calc based on 18 Y, 6 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-19

UniProt Manual:Signal Peptides

UniProt:P31666

Domain

226..368

PF01522 Polysaccharide deacetylase

PMID:19920124[5]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yadE taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128123

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946536

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000457

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P31666

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11749

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11749

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946536

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001687

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1699

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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