wcaL:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

WcaL

Synonyms

predicted glycosyl transferase[1], B2044[2][1], YefL[2][1], WcaL[2][1] , ECK2038, JW2029, yefL, b2044

Product description

predicted colanic biosynthesis glycosyl transferase[2][3]

Putative colanic acid biosynthesis glycosyl transferase[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0009058

biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001296

P

Seeded from EcoCyc (v14.0)

complete

GO:0009103

lipopolysaccharide biosynthetic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0448

P

Seeded from EcoCyc (v14.0)

complete

GO:0016740

transferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc (v14.0)

complete

GO:0016757

transferase activity, transferring glycosyl groups

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0328

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKVGFFLLKF PLSSETFVLN QITAFIDMGF EVEILALQKG DTQNTHAAWT KYNLAARTRW
LQDEPTGKVA KLRHRASQTL RGIHRKNTWQ ALNLKRYGAE SRNLILSAIC GQVATPFRAD
VFIAHFGPAG VTAAKLRELG VIRGKIATIF HGIDISSREV LNHYTPEYQQ LFRRGDLMLP
ISDLWAGRLQ KMGCPREKIA VSRMGVDMTR FSPRPVKAPA TPLEIISVAR LTEKKGLHVA
IEACRQLKEQ GVAFRYRILG IGPWERRLRT LIEQYQLEDV VEMPGFKPSH EVKAMLDDAD
VFLLPSVTGA DGDMEGIPVA LMEAMAVGIP VVSTLHSGIP ELVEADKSGW LVPENDARAL
AQRLAAFSQL DTDELAPVVK RAREKVEHDF NQQVINRELA SLLQAL
Length

406

Mol. Wt

45.362 kDa

pI

9.4 (calculated)

Extinction coefficient

41,940 - 42,315 (calc based on 6 Y, 6 W, and 3 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

209..385

PF00534 Glycosyl transferases group 1

PMID:19920124[5]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=wcaL taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129984

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946565

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006777

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P71243

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7095

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12652

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946565

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003681

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2522

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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