wcaC:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

WcaC

Synonyms

predicted glycosyl transferase[1], B2057[2][1], WcaC[2][1] , ECK2051, JW2042, b2057

Product description

predicted colanic acid biosynthesis glycosyl transferase[2][3]

Putative colanic acid biosynthesis glycosyl transferase[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0009058

biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001296

P

Seeded from EcoCyc (v14.0)

complete

GO:0009103

lipopolysaccharide biosynthetic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0448

P

Seeded from EcoCyc (v14.0)

complete

GO:0016740

transferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc (v14.0)

complete

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rpsM

PMID:16606699[5]

Experiment(s):EBI-1141786

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1141786

Protein

ppsA

PMID:16606699[5]

Experiment(s):EBI-1141786

Protein

rplB

PMID:16606699[5]

Experiment(s):EBI-1141786

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc

MNILQFNVRL AEGGAAGVAL DLHQRALQQG LASHFVYGYG KGGKESVSHQ NYPQVIKHTP
RMTAMANIAL FRLFNRDLFG NFNELYRTIT RTAGPVVLHF HVLHSYWLNL KSVVRFCEKV
KNHKPDVTLV WTLHDHWSVT GRCAFTDGCE GWKTGCQKCP TLNNYPPVKI DRAHQLVAGK
RQLFREMLAL GCQFISPSQH VADAFNSLYG PGRCRIINNG IDMATEAILA DLPPVRETQG
KPKIAVVAHD LRYDGKTNQQ LVREMMALGD KIELHTFGKF SPFTAGNVVN HGFETDKRKL
MSALNQMDAL VFSSRVDNYP LILCEALSIG VPVIATHSDA AREVLQKSGG KTVSEEEVLQ
LVQLSKPEIA QAIFGTTLAE FSQRSRAAYS GQQMLEEYVN FYQNL
Length

405

Mol. Wt

45.259 kDa

pI

8.9 (calculated)

Extinction coefficient

39,880 - 40,880 (calc based on 12 Y, 4 W, and 8 C residues)


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

284..372

PF00534 Glycosyl transferases group 1

PMID:19920124[6]

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=wcaC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129997

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946579

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006811

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P71237

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7102

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13571

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946579

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003688

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3341

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. 5.0 5.1 5.2 5.3 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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