wbbK:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

WbbK

Synonyms

lipopolysaccharide biosynthesis protein[1], WbbK[2][1], YefI[2][1], B2032[2][1] , ECK2026, JW2017, yefI, b2032

Product description

putative transferase[2][3]

Involved in lipopolysaccharide biosynthesis[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997

C

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0009058

biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001296

P

Seeded from EcoCyc (v14.0)

complete

GO:0009103

lipopolysaccharide biosynthetic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0448

P

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc (v14.0)

complete

GO:0016740

transferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc (v14.0)

complete

GO:0019898

extrinsic to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9903

C

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

gnd

PMID:16606699[5]

Experiment(s):EBI-1141685

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1141685

Protein

rpsP

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplP

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

eno

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplF

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpmB

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

atpA

PMID:19402753[6]

LCMS(ID Probability):99.5

Protein

rplA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpsD

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

gadB

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

ahpC

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

gapA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplE

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpsS

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplR

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpsM

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpsR

PMID:19402753[6]

LCMS(ID Probability):99.5

Protein

rpsA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

groS

PMID:19402753[6]

LCMS(ID Probability):99.6 MALDI(Z-score):8.707456

Protein

rplJ

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpsT

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

hns

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

hupA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplM

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplS

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplB

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

dps

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpsF

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpsN

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

talA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

yfiD

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

uspG

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

yccJ

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplY

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

pflB

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

adk

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

adhE

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpsH

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

dhaK

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

glyA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

tig

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

clpB

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

gltA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

pepD

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

ompA

PMID:19402753[6]

MALDI(Z-score):32.734560

Protein

wrbA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

cspC

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

fabF

PMID:19402753[6]

LCMS(ID Probability):99.3

Protein

ygaM

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

cspE

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

pgk

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

htpG

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpoA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

ppa

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

elaB

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

cspG

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

lysU

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

yeeX

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

ycaC

PMID:19402753[6]

LCMS(ID Probability):99.2

Protein

fabG

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

ftnA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

yjbJ

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

yfcZ

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rfaE

PMID:19402753[6]

LCMS(ID Probability):99.6 MALDI(Z-score):24.474200

Protein

yqjD

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

gadC

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

ansB

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

frr

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

oppA

PMID:19402753[6]

LCMS(ID Probability):99.4

Protein

ycfP

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

raiA

PMID:19402753[6]

LCMS(ID Probability):99.4

Protein

smg

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

tpx

PMID:19402753[6]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MGKSIVVVSA VNFTTGGPFT ILKKFLAATN NKENVSFIAL VHSAKELKES YPWVKFIEFP
EVKGSWLKRL HFEYVVCKKL SKELNATHWI CLHDITANVV TKKRYVYCHN PAPFYKGILF
REILMEPSFF LFKMLYGLIY KINIKKNTAV FVQQFWMKEK FIKKYSINNI IVSRPEIKLS
DKSQLTDDDS QFKNNPSELT IFYPAVPRVF KNYELIISAA RKLKEQSNIK FLLTISGTEN
AYAKYIISLA EGLDNVHFLG YLDKEKIDHC YNISDIVCFP SRLETWGLPL SEAKERGKWV
LASDFPFTRE TLGSYEKKAF FDSNNDDMLV KLIIDFKKGN LKKDISDANF IYRNENVLVG
FDELVNFITE EH
Length

372

Mol. Wt

43.19 kDa

pI

9.3 (calculated)

Extinction coefficient

56,840 - 57,465 (calc based on 16 Y, 6 W, and 5 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

185..356

PF00534 Glycosyl transferases group 1

PMID:19920124[7]

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=wbbK taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129972

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946555

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006747

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P37751

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11985

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11985

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946555

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001910

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1928

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 6.11 6.12 6.13 6.14 6.15 6.16 6.17 6.18 6.19 6.20 6.21 6.22 6.23 6.24 6.25 6.26 6.27 6.28 6.29 6.30 6.31 6.32 6.33 6.34 6.35 6.36 6.37 6.38 6.39 6.40 6.41 6.42 6.43 6.44 6.45 6.46 6.47 6.48 6.49 6.50 6.51 6.52 6.53 6.54 6.55 6.56 6.57 6.58 6.59 6.60 6.61 6.62 6.63 6.64 6.65 6.66 6.67 6.68 6.69 6.70 6.71 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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