ulaR:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

UlaR

Synonyms

DNA-binding transcriptional dual regulator[1], UlaR[2][1], B4191[2][1], YjfQ[2][1] , ECK4187, JW4149, yjfQ, b4191

Product description

UlaR transcriptional repressor[2][3]

Repressor for the L-ascorbate utilization (ula) divergon[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003677

DNA binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0238

F

Seeded from EcoCyc (v14.0)

complete

GO:0003700

transcription factor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001034

F

Seeded from EcoCyc (v14.0)

complete

GO:0003700

transcription factor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018356

F

Seeded from EcoCyc (v14.0)

complete

GO:0005622

intracellular

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001034

C

Seeded from EcoCyc (v14.0)

complete

GO:0005622

intracellular

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018356

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01563

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0006350

transcription

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0804

P

Seeded from EcoCyc (v14.0)

complete

GO:0006355

regulation of transcription, DNA-dependent

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001034

P

Seeded from EcoCyc (v14.0)

complete

GO:0006355

regulation of transcription, DNA-dependent

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018356

P

Seeded from EcoCyc (v14.0)

complete

GO:0016564

transcription repressor activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01563

F

Seeded from EcoCyc (v14.0)

complete

GO:0045892

negative regulation of transcription, DNA-dependent

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01563

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

aceF

PMID:15690043[5]

Experiment(s):EBI-889746

Protein

ynbC

PMID:15690043[5]

Experiment(s):EBI-889746

Protein

groL

PMID:15690043[5]

Experiment(s):EBI-889746, EBI-894652

Protein

rplA

PMID:15690043[5]

Experiment(s):EBI-889746

Protein

rplC

PMID:15690043[5]

Experiment(s):EBI-889746, EBI-894652

Protein

rpsA

PMID:15690043[5]

Experiment(s):EBI-889746

Protein

rpsD

PMID:15690043[5]

Experiment(s):EBI-889746, EBI-894652

Protein

rpsE

PMID:15690043[5]

Experiment(s):EBI-889746, EBI-894652

Protein

rpsM

PMID:15690043[5]

Experiment(s):EBI-889746, EBI-894652

Protein

tufA

PMID:15690043[5]

Experiment(s):EBI-889746, EBI-894652

Protein

dnaK

PMID:15690043[5]

Experiment(s):EBI-889746

Protein

yfgC

PMID:15690043[5]

Experiment(s):EBI-894652

Protein

yfhM

PMID:15690043[5]

Experiment(s):EBI-894652

Protein

dnaJ

PMID:15690043[5]

Experiment(s):EBI-894652

Protein

hupB

PMID:15690043[5]

Experiment(s):EBI-894652

Protein

lpdA

PMID:15690043[5]

Experiment(s):EBI-894652

Protein

lysR

PMID:15690043[5]

Experiment(s):EBI-894652

Protein

rplD

PMID:15690043[5]

Experiment(s):EBI-894652

Protein

rplL

PMID:15690043[5]

Experiment(s):EBI-894652

Protein

rplM

PMID:15690043[5]

Experiment(s):EBI-894652

Protein

rplN

PMID:15690043[5]

Experiment(s):EBI-894652

Protein

rplS

PMID:15690043[5]

Experiment(s):EBI-894652

Protein

rplU

PMID:15690043[5]

Experiment(s):EBI-894652

Protein

rplV

PMID:15690043[5]

Experiment(s):EBI-894652

Protein

rpmB

PMID:15690043[5]

Experiment(s):EBI-894652

Protein

rpsB

PMID:15690043[5]

Experiment(s):EBI-894652

Protein

rpsC

PMID:15690043[5]

Experiment(s):EBI-894652

Protein

rpsG

PMID:15690043[5]

Experiment(s):EBI-894652

Protein

rpsH

PMID:15690043[5]

Experiment(s):EBI-894652

Protein

rpsI

PMID:15690043[5]

Experiment(s):EBI-894652

Protein

rpsJ

PMID:15690043[5]

Experiment(s):EBI-894652

Protein

rpsL

PMID:15690043[5]

Experiment(s):EBI-894652

Protein

rpsN

PMID:15690043[5]

Experiment(s):EBI-894652

Protein

rpsS

PMID:15690043[5]

Experiment(s):EBI-894652

Protein

rpsT

PMID:15690043[5]

Experiment(s):EBI-894652

Protein

yagX

PMID:15690043[5]

Experiment(s):EBI-894652

Protein

ybgH

PMID:15690043[5]

Experiment(s):EBI-894652

Protein

yhaJ

PMID:15690043[5]

Experiment(s):EBI-894652

Protein

groL

PMID:16606699[6]

Experiment(s):EBI-1147646

Protein

rplU

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rpsL

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplS

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):2.332434

Protein

rpsS

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rpsT

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

groS

PMID:19402753[7]

LCMS(ID Probability):99.4 MALDI(Z-score):16.486861

Protein

rpsD

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):26.547926

Protein

groL

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):17.053160

Protein

rplM

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

hupB

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rpsN

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplA

PMID:19402753[7]

LCMS(ID Probability):97.9 MALDI(Z-score):16.571227

Protein

rpsC

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):7.542789

Protein

tufB

PMID:19402753[7]

MALDI(Z-score):20.349012

Protein

rpsM

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):17.053160

Protein

rpmB

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

dnaJ

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

yfhM

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

yagX

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

yfgC

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

yhaJ

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

lysR

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

dtpD

PMID:19402753[7]

LCMS(ID Probability):99.0

Protein

rplL

PMID:19402753[7]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MTEAQRHQIL LEMLAQLGFV TVEKVVERLG ISPATARRDI NKLDESGKLK KVRNGAEAIT
QQRPRWTPMN LHQAQNHDEK VRIAKAASQL VNPGESVVIN CGSTAFLLGR EMCGKPVQII
TNYLPLANYL IDQEHDSVII MGGQYNKSQS ITLSPQGSEN SLYAGHWMFT SGKGLTAEGL
YKTDMLTAMA EQKMLSVVGK LVVLVDSSKI GERAGMLFSR ADQIDMLITG KNANPEILQQ
LEAQGVSILR V
Length

251

Mol. Wt

27.601 kDa

pI

8.6 (calculated)

Extinction coefficient

18,450 - 18,700 (calc based on 5 Y, 2 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

77..230

PF00455 Bacterial regulatory proteins, deoR family

PMID:19920124[8]

Domain

6..62

PF08220 DeoR-like helix-turn-helix domain

PMID:19920124[8]

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ulaR taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16132013

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948706

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013713

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A9W0

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7854

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12491

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948706

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004350

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2384

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 5.16 5.17 5.18 5.19 5.20 5.21 5.22 5.23 5.24 5.25 5.26 5.27 5.28 5.29 5.30 5.31 5.32 5.33 5.34 5.35 5.36 5.37 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  6. ↑ Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  7. ↑ 7.00 7.01 7.02 7.03 7.04 7.05 7.06 7.07 7.08 7.09 7.10 7.11 7.12 7.13 7.14 7.15 7.16 7.17 7.18 7.19 7.20 7.21 7.22 7.23 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  8. ↑ 8.0 8.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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