ugpA:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

UgpA

Synonyms

glycerol-3-phosphate transporter subunit[1], membrane component of ABC superfamily[1], B3452[2][1], Ugp[2][1], PsiC[2][1], PsiB[2][1], UgpA[2][1] , ECK3436, JW3417, psiB, psiC, b3452

Product description

UgpA[2][3];

Component of glycerol-3-P ABC transporter[2][3]

sn-Glycerol-3-phosphate transport system, integral membrane protein[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of glycerol-3-P ABC transporter

could be indirect

Protein

rpsP

PMID:19402753[5]

LCMS(ID Probability):99.5

Protein

ompA

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

ompC

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

atpD

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

atpA

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

ompX

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

atpC

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

ybiO

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

ugpC

PMID:19402753[5]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

plasma membrane

C-terminus localized in the cytoplasm with 6 predicted transmembrane domains

Daley et al. (2005) [6]

plasma membrane

From EcoCyc[3]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSSSRPVFRS RWLPYLLVAP QLIITVIFFI WPAGEALWYS LQSVDPFGFS SQFVGLDNFV
TLFHDSYYLD SFWTTIKFST FVTVSGLLVS LFFAALVEYI VRGSRFYQTL MLLPYAVAPA
VAAVLWIFLF NPGRGLITHF LAEFGYDWNH AQNSGQAMFL VVFASVWKQI SYNFLFFYAA
LQSIPRSLIE AAAIDGAGPI RRFFKIALPL IAPVSFFLLV VNLVYAFFDT FPVIDAATSG
GPVQATTTLI YKIYREGFTG LDLASSAAQS VVLMFLVIVL TVVQFRYVES KVRYQ
Length

295

Mol. Wt

33.264 kDa

pI

9.2 (calculated)

Extinction coefficient

60,850 (calc based on 15 Y, 7 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

86..294

PF00528 Binding-protein-dependent transport system inner membrane component

PMID:19920124[7]

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tmhmm.php?gene=ugpA&show=pic&.jpg
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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ugpA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131324

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947957

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011272

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P10905

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11046

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11046

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947957

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001035

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1039

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  6. ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

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