torZ:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

TorZ

Synonyms

trimethylamine N-oxide reductase system III, catalytic subunit[1], B1872[2][1], TorZ[2][1], BisZ[2][1] , bisZ, ECK1873, JW1861, b1872

Product description

trimethylamine N-oxide reductase III, TorZ subunit[2][3];

Component of trimethylamine N-oxide reductase III[2][3]

Periplasmic trimethylamine oxide (TMAO) reductase; also has biotin sulfoxide and DMSO reductase activities; respiratory system[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0030288

outer membrane-bounded periplasmic space

C

Seeded from Riley et al 2006 [1].

Missing: evidence, reference

GO:0009054

electron acceptor activity

1

Seeded from Riley et al 2006 [1].

Missing: evidence, reference

GO:0005488

binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR009010

F

Seeded from EcoCyc (v14.0)

complete

GO:0009055

electron carrier activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006655

F

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006655

F

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006656

F

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006657

F

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006658

F

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

F

Seeded from EcoCyc (v14.0)

complete

GO:0030151

molybdenum ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006657

F

Seeded from EcoCyc (v14.0)

complete

GO:0030151

molybdenum ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0500

F

Seeded from EcoCyc (v14.0)

complete

GO:0042597

periplasmic space

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0574

C

Seeded from EcoCyc (v14.0)

complete

GO:0042597

periplasmic space

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0200

C

Seeded from EcoCyc (v14.0)

complete

GO:0050626

trimethylamine-N-oxide reductase (cytochrome c) activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:1.7.2.3

F

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006658

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of trimethylamine N-oxide reductase III

could be indirect

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1141136

Protein

acnB

PMID:16606699[5]

Experiment(s):EBI-1141136

Protein

eno

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

hns

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

fimA

PMID:19402753[6]

LCMS(ID Probability):99.5

Protein

rpsF

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpsT

PMID:19402753[6]

LCMS(ID Probability):99.5

Protein

rplK

PMID:19402753[6]

LCMS(ID Probability):99.5

Protein

groS

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

pgm

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpmC

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpmB

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

phoA

PMID:19402753[6]

LCMS(ID Probability):99.4

Protein

rpsJ

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplI

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

cspE

PMID:19402753[6]

LCMS(ID Probability):99.4

Protein

yfbN

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpsN

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

ompA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

yfcZ

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

clpB

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplW

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

osmY

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

cspC

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

ydjA

PMID:19402753[6]

LCMS(ID Probability):99.4

Protein

lpp

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplL

PMID:19402753[6]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

periplasm

Periplasm

PMID:11004177[7]

EchoLocation:torZ


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MIREEVMTLT RREFIKHSGI AAGALVVTSA APLPAWAEEK GGKILTAGRW GAMNVEVKDG
KIVSSTGALA KTIPNSLQST AADQVHTTAR IQHPMVRKSY LDNPLQPAKG RGEDTYVQVS
WEQALKLIHE QHDRIRKANG PSAIFAGSYG WRSSGVLHKA QTLLQRYMNL AGGYSGHSGD
YSTGAAQVIM PHVVGSVEVY EQQTSWPLIL ENSQVVVLWG MNPLNTLKIA WSSTDEQGLE
YFHQLKKSGK PVIAIDPIRS ETIEFFDDNA TWIAPNMGTD VALMLGIAHT LMTQGKHDKV
FLEKYTTGYP QFEEYLTGKS DNTPKSAVWA AEITGVPEAQ IVKLAELMAA NRTMLMAGWG
IQRQQYGEQK HWMLVTLAAM LGQIGTPGGG FGFSYHYSNG GNPTRVGGVL PEMSAAIAGH
ASEAADDGGM TAIPVARIVD ALENPGGKYQ HNGKEQTYPN IKMIWWAGGG NFTHHQDTNR
LIKAWQKPEM IVVSECYWTA AAKHADIVLP ITTSFERNDL TMTGDYSNQH IVPMKQAVAP
QFEARNDFDV FADLAELLKP GGKEIYTEGK DEMAWLKFFY DAAQKGARAQ RVTMPMFNAF
WQQNKLIEMR HSEKNEQYVR YGDFRADPVK NALGTPSGKI EIYSKTLEKF GYKDCPAHPT
WLAPDEWKGT ADEKQLQLLT AHPAHRLHSQ LNYAELRKKY AIADREPITI HTEDAARFGI
ANGDLVRVWN KRGQILTGAV VTDGIKKGVV CVHEGAWPDL ENGLCKNGSA NVLTADIPSS
QLANACAGNS ALVYIEKYTG NAPKLTAFDQ PAVQA
Length

815

Mol. Wt

89.722 kDa

pI

7.2 (calculated)

Extinction coefficient

157,220 - 157,845 (calc based on 28 Y, 21 W, and 5 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-31

UniProt Manual:Signal Peptides

UniProt:P46923

Domain

84..551

PF00384 Molybdopterin oxidoreductase

PMID:19920124[8]

Domain

670..785

PF01568 Molydopterin dinucleotide binding domain

PMID:19920124[8]

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=torZ taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111350

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946389

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006244

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P46923

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7022

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13276

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946389

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003609

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3061

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 6.11 6.12 6.13 6.14 6.15 6.16 6.17 6.18 6.19 6.20 6.21 6.22 6.23 6.24 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ Gon, S et al. (2000) The torYZ (yecK bisZ) operon encodes a third respiratory trimethylamine N-oxide reductase in Escherichia coli. J. Bacteriol. 182 5779-86 PubMed
  8. ↑ 8.0 8.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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