sxy:Gene Product(s)

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

YccR

Synonyms

conserved protein[1], B0959[2][1], YccR[2][1], Sxy[3][1] , ECK0950, JW0942, tfoX, yccR, b0959

Product description

conserved protein[2]; transcriptional coactivator for CRP[3]

Required for expression of CRP-S-dependent promoters; characterized in H. influenzae as a gene required for competence[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

prsA

PMID:15690043[5]

Experiment(s):EBI-878820, EBI-881890

Protein

npdA

PMID:15690043[5]

Experiment(s):EBI-878820

Protein

cobB

PMID:19402753[6]

MALDI(Z-score):22.098829

Protein

prs

PMID:19402753[6]

LCMS(ID Probability):99.6 MALDI(Z-score):38.858827

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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKSLSYKRIY KSQEYLATLG TIEYRSLFGS YSLTVDDTVF AMVSDGELYL RACEQSAQYC
VKHPPVWLTY KKCGRSVTLN YYRVDESLWR NQLKLVRLSK YSLDAALKEK STRNTRERLK
DLPNMSFHLE AILGEVGIKD VRALRILGAK MCWLRLRQQN SLVTEKILFM LEGAIIGIHE
AALPVARRQE LAEWADSLTP KQEFPAELE
Length

209

Mol. Wt

24.147 kDa

pI

9.3 (calculated)

Extinction coefficient

38,390 - 38,890 (calc based on 11 Y, 4 W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

115..195

PF04994 TfoX C-terminal domain

PMID:19920124[7]

Domain

12..108

PF04993 TfoX N-terminal domain

PMID:19920124[7]

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Structure
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Structures

<beststructure> gene=sxy taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128926

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946504

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003249

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P75869

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6494

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13720

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946504

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003094

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3484

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  6. ↑ 6.0 6.1 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ 7.0 7.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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