ssuA:Gene Product(s)

From EcoliWiki
Jump to: navigation, search

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

SsuA

Synonyms

alkanesulfonate transporter subunit[1], periplasmic-binding component of ABC superfamily[1], B0936[2][1], YcbO[2][1], SsuA[2][1], hypothetical protein[3][1] , ECK0927, JW0919, ycbO, b0936

Product description

hypothetical protein[2]; SsuA[3];

Component of YcbE/YcbM ABC transporter[2]; aliphatic sulfonate ABC transporter[3]

Putative aliphatic sulphonate binding protein precursor; sulfur starvation inducible[4]

EC number (for enzymes)


edit table

<protect></protect>

Notes

Function

[back to top]


<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0006790

sulfur metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010067

P

Seeded from EcoCyc (v14.0)

complete

GO:0006790

sulfur metabolic process

PMID:10506196[5]

IGI: Inferred from Genetic Interaction

P

Seeded from EcoCyc (v14.0)

Missing: with/from

GO:0006790

sulfur metabolic process

PMID:10506196[5]

IGI: Inferred from Genetic Interaction

EcoliWiki:ssuE
EcoliWiki:ssuD
EcoliWiki:ssuC
EcoliWiki:ssuB

P

Seeded from EcoCyc (v14.0)

complete

GO:0030288

outer membrane-bounded periplasmic space

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001638

C

Seeded from EcoCyc (v14.0)

complete

GO:0042597

periplasmic space

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0574

C

Seeded from EcoCyc (v14.0)

complete

GO:0042597

periplasmic space

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0200

C

Seeded from EcoCyc (v14.0)

complete

GO:0042597

periplasmic space

PMID:10506196[5]

ISS: Inferred from Sequence or Structural Similarity

C

Seeded from EcoCyc (v14.0)

Missing: with/from

GO:0006790

sulfur metabolic process

PMID:10506196[5]

IGI: Inferred from Genetic Interaction

EcoliWiki:ssuE|EcoliWiki:ssuD|EcoliWiki:ssuC|EcoliWiki: ssuB

P

complete

GO:0042918

alkanesulfonate transport

PMID:10506196[5]

IMP: Inferred from Mutant Phenotype

P

Seeded from EcoCyc (v14.0)

complete

GO:0042959

alkanesulfonate transporter activity

PMID:10506196[5]

IMP: Inferred from Mutant Phenotype

F

Seeded from EcoCyc (v14.0)

complete

GO:0043190

ATP-binding cassette (ABC) transporter complex

PMID:10506196[5]

IMP: Inferred from Mutant Phenotype

C

Seeded from EcoCyc (v14.0)

complete

GO:0043190

ATP-binding cassette (ABC) transporter complex

PMID:10506196[5]

ISS: Inferred from Sequence or Structural Similarity

C

Seeded from EcoCyc (v14.0)

Missing: with/from

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of YcbE/YcbM ABC transporter

could be indirect


edit table

</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

Periplasm

PMID:10781534[6]

EchoLocation:ssuA


edit table

<protect></protect>

Notes

Structure and Physical Properties

[back to top]


<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MFRFLTFCLC EVMPMRNIIK LALAGLLSVS TFAVAAESSP EALRIGYQKG SIGMVLAKSH
QLLEKRYPES KISWVEFPAG PQMLEALNVG SIDLGSTGDI PPIFAQAAGA DLVYVGVEPP
KPKAEVILVA ENSPIKTVAD LKGHKVAFQK GSSSHNLLLR ALRQAGLKFT DIQPTYLTPA
DARAAFQQGN VDAWAIWDPY YSAALLQGGV RVLKDGTDLN QTGSFYLAAR PYAEKNGAFI
QGVLATFSEA DALTRSQREQ SIALLAKTMG LPAPVIASYL DHRPPTTIKP VNAEVAALQQ
QTADLFYENR LVPKKVDIRQ RIWQPTQLEG KQL
Length

333

Mol. Wt

36.277 kDa

pI

9.2 (calculated)

Extinction coefficient

36,900 - 37,150 (calc based on 10 Y, 4 W, and 2 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-21

UniProt Manual:Signal Peptides

UniProt:P75853

Domain

57..243

PF09084 NMT1/THI5 like

PMID:19920124[7]

edit table

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ssuA taxon=562,83333 </beststructure>

Models

View models at:

edit table
</protect>

Structure figures

<protect>

</protect>

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table

<protect></protect>

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111189

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945560

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003180

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P75853

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6478

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13707

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945560

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003078

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3471

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]




References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 van Der Ploeg, JR et al. (1999) The Escherichia coli ssuEADCB gene cluster is required for the utilization of sulfur from aliphatic sulfonates and is regulated by the transcriptional activator Cbl. J. Biol. Chem. 274 29358-65 PubMed
  6. ↑ Eichhorn, E et al. (2000) Deletion analysis of the Escherichia coli taurine and alkanesulfonate transport systems. J. Bacteriol. 182 2687-95 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=ssuA:Gene_Product(s)&oldid=1492918"