ssrS:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

SsrS RNA

Synonyms

6S regulatory RNA[1], SsrS[2][1], B2911[2][1], Ssr[2][1]

Product description

6S RNA[2][3]

EC number (for enzymes)


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Notes

6S RNA was first identified by Hindley in 1967 [4] who did fingerprint analysis of 32P-labelled E. coli RNAs.

Function

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<protect> Gene Ontology
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Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

RNA polymerase holoenzyme containing sigma70

"UV crosslinking experiments revealed that 6S RNA directly contacts the sigma70 and beta/beta' subunits of RNA polymerase."[5]


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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties

Type

sRNA

Sequence 
AUUUCUCUGA GAUGUUCGCA AGCGGGCCAG UCCCCUGAGC CGAUAUUUCA UACCACAAGA
AUGUGGCGCU CCGCGGUUGG UGAGCAUGCU CGGUCCGUCC GAGAAGCCUU AAAACUGCGA
CGACACAUUC ACCUUGAACC AAGGGUUCAA GGGUUACAGC CUGCGGCGGC AUCUCGGAGA UUC
Mol. Wt

59034.26

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References
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Structure
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Structures

<beststructure> gene=ssrS taxon=562,83333 </beststructure>

Models

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Structure figures

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Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG30099

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG30099

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002541

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4262

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009556

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ Hindley, J (1967) Fractionation of 32P-labelled ribonucleic acids on polyacrylamide gels and their characterization by fingerprinting. J. Mol. Biol. 30 125-36 PubMed
  5. ↑ Wassarman, KM & Storz, G (2000) 6S RNA regulates E. coli RNA polymerase activity. Cell 101 613-23 PubMed

Categories

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