srlR:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

SrlR

Synonyms

DNA-bindng transcriptional repressor[1], SrlR[2][1], B2707[2][1], GutR[2][1], regulator for gut (srl), glucitol operon[2][1] , ECK2702, gutR, JW2676, b2707

Product description

GutR transcriptional repressor[2][3]

Regulatory gene for srl operon[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

ynbC

PMID:15690043[5]

Experiment(s):EBI-887918

Protein

dnaK

PMID:15690043[5]

Experiment(s):EBI-887918

Protein

entC

PMID:15690043[5]

Experiment(s):EBI-887918

Protein

hupA

PMID:15690043[5]

Experiment(s):EBI-887918

Protein

hupB

PMID:15690043[5]

Experiment(s):EBI-887918

Protein

pflB

PMID:15690043[5]

Experiment(s):EBI-887918

Protein

rplA

PMID:15690043[5]

Experiment(s):EBI-887918

Protein

rplB

PMID:15690043[5]

Experiment(s):EBI-887918

Protein

rplC

PMID:15690043[5]

Experiment(s):EBI-887918

Protein

rplD

PMID:15690043[5]

Experiment(s):EBI-887918

Protein

rplE

PMID:15690043[5]

Experiment(s):EBI-887918

Protein

rplM

PMID:15690043[5]

Experiment(s):EBI-887918

Protein

rplO

PMID:15690043[5]

Experiment(s):EBI-887918

Protein

rplR

PMID:15690043[5]

Experiment(s):EBI-887918

Protein

rplT

PMID:15690043[5]

Experiment(s):EBI-887918

Protein

rplU

PMID:15690043[5]

Experiment(s):EBI-887918

Protein

rplV

PMID:15690043[5]

Experiment(s):EBI-887918

Protein

rplW

PMID:15690043[5]

Experiment(s):EBI-887918

Protein

rpmC

PMID:15690043[5]

Experiment(s):EBI-887918

Protein

rpmG

PMID:15690043[5]

Experiment(s):EBI-887918

Protein

rpsA

PMID:15690043[5]

Experiment(s):EBI-887918

Protein

rpsB

PMID:15690043[5]

Experiment(s):EBI-887918

Protein

rpsE

PMID:15690043[5]

Experiment(s):EBI-887918

Protein

ydaT

PMID:15690043[5]

Experiment(s):EBI-887918

Protein

yfiF

PMID:15690043[5]

Experiment(s):EBI-887918

Protein

ynbC

PMID:19402753[6]

LCMS(ID Probability):99.0

Protein

entC

PMID:19402753[6]

LCMS(ID Probability):99.0

Protein

ydaT

PMID:19402753[6]

LCMS(ID Probability):99.0

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKPRQRQAAI LEYLQKQGKC SVEELAQYFD TTGTTIRKDL VILEHAGTVI RTYGGVVLNK
EESDPPIDHK TLINTHKKEL IAEAAVSFIH DGDSIILDAG STVLQMVPLL SRFNNITVMT
NSLHIVNALS ELDNEQTILM PGGTFRKKSA SFHGQLAENA FEHFTFDKLF MGTDGIDLNA
GVTTFNEVYT VSKAMCNAAR EVILMADSSK FGRKSPNVVC SLESVDKLIT DAGIDPAFRQ
ALEEKGIDVI ITGESNE
Length

257

Mol. Wt

28.236 kDa

pI

5.2 (calculated)

Extinction coefficient

5,960 - 6,335 (calc based on 4 Y, 0 W, and 3 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

75..231

PF00455 Bacterial regulatory proteins, deoR family

PMID:19920124[7]

Domain

6..62

PF08220 DeoR-like helix-turn-helix domain

PMID:19920124[7]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=srlR taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130614

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948942

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008900

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P15082

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10974

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10974

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948942

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000963

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0967

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 5.16 5.17 5.18 5.19 5.20 5.21 5.22 5.23 5.24 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  6. ↑ 6.0 6.1 6.2 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ 7.0 7.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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