sodA:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

SodA

Synonyms

superoxide dismutase, Mn[1], B3908[2][1], SodA[2][1] , ECK3901, JW3879, b3908

Product description

SodA[2][3];

Component of superoxide dismutase (Mn)[2][3]

Superoxide dismutase, Mn[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0004784

superoxide dismutase activity

PMID:4921969[5]

IDA: Inferred from Direct Assay

F

complete

GO:0019430

removal of superoxide radicals

PMID:4943714[6]

IDA: Inferred from Direct Assay

P

complete

GO:0004784

superoxide dismutase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001189

F

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

PMID:4943714[6]

IDA: Inferred from Direct Assay

P

complete

GO:0004784

superoxide dismutase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019831

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

PMID:4580575[7]

IDA: Inferred from Direct Assay

C

complete

GO:0004784

superoxide dismutase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019832

F

Seeded from EcoCyc (v14.0)

complete

GO:0046872

metal ion binding

PMID:4921969[5]

IDA: Inferred from Direct Assay

F

complete

GO:0004784

superoxide dismutase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019833

F

Seeded from EcoCyc (v14.0)

complete

GO:0006801

superoxide metabolic process

PMID:4196244[8]

IDA: Inferred from Direct Assay

P

complete

GO:0004784

superoxide dismutase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:1.15.1.1

F

Seeded from EcoCyc (v14.0)

complete

GO:0030145

manganese ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0464

F

Seeded from EcoCyc (v14.0)

complete

GO:0046872

metal ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001189

F

Seeded from EcoCyc (v14.0)

complete

GO:0046872

metal ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019831

F

Seeded from EcoCyc (v14.0)

complete

GO:0046872

metal ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019832

F

Seeded from EcoCyc (v14.0)

complete

GO:0046872

metal ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019833

F

Seeded from EcoCyc (v14.0)

complete

GO:0046872

metal ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001189

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019831

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019832

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019833

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of superoxide dismutase (Mn)

could be indirect

Protein

intS

PMID:16606699[9]

Experiment(s):EBI-1146986

Protein

yicC

PMID:16606699[9]

Experiment(s):EBI-1146986

Protein

alr

PMID:16606699[9]

Experiment(s):EBI-1146986

Protein

atoA

PMID:16606699[9]

Experiment(s):EBI-1146986

Protein

rhlE

PMID:16606699[9]

Experiment(s):EBI-1146986

Protein

glpC

PMID:16606699[9]

Experiment(s):EBI-1146986
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSYTLPSLPY AYDALEPHFD KQTMEIHHTK HHQTYVNNAN AALESLPEFA NLPVEELITK
LDQLPADKKT VLRNNAGGHA NHSLFWKGLK KGTTLQGDLK AAIERDFGSV DNFKAEFEKA
AASRFGSGWA WLVLKGDKLA VVSTANQDSP LMGEAISGAS GFPIMGLDVW EHAYYLKFQN
RRPDYIKEFW NVVNWDEAAA RFAAKK
Length

206

Mol. Wt

23.097 kDa

pI

7.0 (calculated)

Extinction coefficient

43,430 (calc based on 7 Y, 6 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P00448

Domain

2..90

PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain

PMID:19920124[10]

Domain

93..202

PF02777 Iron/manganese superoxide dismutases, C-terminal domain

PMID:19920124[10]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=sodA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:49176442

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948403

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012761

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P00448

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10953

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10953

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948403

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000942

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0946

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Keele, BB Jr et al. (1970) Superoxide dismutase from escherichia coli B. A new manganese-containing enzyme. J. Biol. Chem. 245 6176-81 PubMed
  6. ↑ 6.0 6.1 Beauchamp, C & Fridovich, I (1971) Superoxide dismutase: improved assays and an assay applicable to acrylamide gels. Anal. Biochem. 44 276-87 PubMed
  7. ↑ Gregory, EM et al. (1973) Superoxide dismutases of Escherichia coli: intracellular localization and functions. J. Bacteriol. 115 987-91 PubMed
  8. ↑ Gregory, EM & Fridovich, I (1973) Induction of superoxide dismutase by molecular oxygen. J. Bacteriol. 114 543-8 PubMed
  9. ↑ 9.0 9.1 9.2 9.3 9.4 9.5 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  10. ↑ 10.0 10.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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