smtA:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

SmtA

Synonyms

predicted S-adenosyl-L-methionine-dependent methyltransferase[1], B0921[2][1], YcbD[2][1], SmtA[2][1] , ECK0912, JW0904, ycbD, b0921

Product description

predicted S-adenosylmethionine-dependent methyltransferase[2][3]

Putative methyltransferase, SAM-dependent, non-essential protein, Hns-regulated[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013216

P

Seeded from EcoCyc (v14.0)

complete

GO:0008168

methyltransferase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013216

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

nadE

PMID:16606699[5]

Experiment(s):EBI-1138362

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1138362

Protein

matC

PMID:16606699[5]

Experiment(s):EBI-1138362

Protein

speG

PMID:16606699[5]

Experiment(s):EBI-1138362

Protein

uxuR

PMID:16606699[5]

Experiment(s):EBI-1138362

Protein

inaA

PMID:16606699[5]

Experiment(s):EBI-1138362

Protein

yggS

PMID:16606699[5]

Experiment(s):EBI-1138362
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MQDRNFDDIA EKFSRNIYGT TKGQLRQAIL WQDLDRVLAE MGPQKLRVLD AGGGEGQTAI
KMAERGHQVI LCDLSAQMID RAKQAAEAKG VSDNMQFIHC AAQDVASHLE TPVDLILFHA
VLEWVADPRS VLQTLWSVLR PGGVLSLMFY NAHGLLMHNM VAGNFDYVQA GMPKKKKRTL
SPDYPRDPAQ VYLWLEEAGW QIMGKTGVRV FHDYLREKHQ QRDCYEALLE LETRYCRQEP
YITLGRYIHV TARKPQSKDK V
Length

261

Mol. Wt

29.814 kDa

pI

8.0 (calculated)

Extinction coefficient

42,400 - 42,900 (calc based on 10 Y, 5 W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

49..147

PF08241 Methyltransferase domain

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=smtA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128888

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945547

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003131

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P36566

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG12167

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12167

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945547

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002063

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2086

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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