serB:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

SerB

Synonyms

3-phosphoserine phosphatase[1], B4388[2][1], SerB[2][1] , ECK4380, JW4351, b4388

Product description

PSERPHOSPHA- Phosphoserine phosphatase; HAD9[3]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0006545

glycine biosynthetic process

P

Seeded from Riley et al 2006 [1].

Missing: evidence, reference

GO:0004647

phosphoserine phosphatase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004469

F

Seeded from EcoCyc (v14.0)

complete

GO:0004647

phosphoserine phosphatase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:3.1.3.3

F

Seeded from EcoCyc (v14.0)

complete

GO:0006564

L-serine biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004469

P

Seeded from EcoCyc (v14.0)

complete

GO:0006564

L-serine biosynthetic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0718

P

Seeded from EcoCyc (v14.0)

complete

GO:0006564

L-serine biosynthetic process

PMID:14086727[4]

IDA: Inferred from Direct Assay

P

complete

GO:0004647

phosphoserine phosphatase activity

PMID:14086727[4]

IDA: Inferred from Direct Assay

F

complete

GO:0005737

cytoplasm

PMID:14086727[4]

IDA: Inferred from Direct Assay

C

complete

GO:0008652

cellular amino acid biosynthetic process

PMID:14086727[4]

IDA: Inferred from Direct Assay

P

complete

GO:0016791

phosphatase activity

PMID:14086727[4]

IDA: Inferred from Direct Assay

F

complete

GO:0000287

magnesium ion binding

PMID:14086727[4]

IDA: Inferred from Direct Assay

F

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

nadE

PMID:16606699[5]

Experiment(s):EBI-1147974

Protein

rpsJ

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpsN

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpsP

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpsT

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

fimA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpmA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

hdeA

PMID:19402753[6]

LCMS(ID Probability):99.2

Protein

atpC

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpmC

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplW

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rplL

PMID:19402753[6]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MPNITWCDLP EDVSLWPGLP LSLSGDEVMP LDYHAGRSGW LLYGRGLDKQ RLTQYQSKLG
AAMVIVAAWC VEDYQVIRLA GSLTARATRL AHEAQLDVAP LGKIPHLRTP GLLVMDMDST
AIQIECIDEI AKLAGTGEMV AEVTERAMRG ELDFTASLRS RVATLKGADA NILQQVRENL
PLMPGLTQLV LKLETLGWKV AIASGGFTFF AEYLRDKLRL TAVVANELEI MDGKFTGNVI
GDIVDAQYKA KTLTRLAQEY EIPLAQTVAI GDGANDLPMI KAAGLGIAYH AKPKVNEKAE
VTIRHADLMG VFCILSGSLN QK
Length

322

Mol. Wt

35.043 kDa

pI

5.6 (calculated)

Extinction coefficient

39,420 - 39,920 (calc based on 8 Y, 5 W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

111..284

PF00702 haloacid dehalogenase-like hydrolase

PMID:19920124[7]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=serB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16132205

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948913

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0014393

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AGB0

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10945

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10945

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948913

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000934

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0938

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  4. ↑ 4.0 4.1 4.2 4.3 4.4 4.5 PIZER, LI (1963) THE PATHWAY AND CONTROL OF SERINE BIOSYNTHESIS IN ESCHERICHIA COLI. J. Biol. Chem. 238 3934-44 PubMed
  5. ↑ Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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