sbp:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

Sbp

Synonyms

sulfate transporter subunit[1], periplasmic-binding component of ABC superfamily[1], B3917[2][1], Sbp[2][1] , ECK3909, JW3888, b3917

Product description

Sbp[2][3];

Component of sulfate ABC transporter[2][3]

Periplasmic sulfate-binding protein[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005215

transporter activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006059

F

Seeded from EcoCyc (v14.0)

complete

GO:0006810

transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006059

P

Seeded from EcoCyc (v14.0)

complete

GO:0006810

transport

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc (v14.0)

complete

GO:0008271

secondary active sulfate transmembrane transporter activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000957

F

Seeded from EcoCyc (v14.0)

complete

GO:0008272

sulfate transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000957

P

Seeded from EcoCyc (v14.0)

complete

GO:0008272

sulfate transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005669

P

Seeded from EcoCyc (v14.0)

complete

GO:0008272

sulfate transport

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0764

P

Seeded from EcoCyc (v14.0)

complete

GO:0015419

sulfate transmembrane-transporting ATPase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005669

F

Seeded from EcoCyc (v14.0)

complete

GO:0030288

outer membrane-bounded periplasmic space

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000957

C

Seeded from EcoCyc (v14.0)

complete

GO:0030288

outer membrane-bounded periplasmic space

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005669

C

Seeded from EcoCyc (v14.0)

complete

GO:0042597

periplasmic space

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0574

C

Seeded from EcoCyc (v14.0)

complete

GO:0042597

periplasmic space

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0200

C

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of sulfate ABC transporter

could be indirect

Protein

matC

PMID:16606699[5]

Experiment(s):EBI-1147006

Protein

dnaK

PMID:16606699[5]

Experiment(s):EBI-1147006

Protein

mhpE

PMID:16606699[5]

Experiment(s):EBI-1147006

Protein

rplB

PMID:16606699[5]

Experiment(s):EBI-1147006

Protein

aceE

PMID:16606699[5]

Experiment(s):EBI-1147006

Protein

secA

PMID:16606699[5]

Experiment(s):EBI-1147006

Protein

clpB

PMID:16606699[5]

Experiment(s):EBI-1147006

Protein

lon

PMID:16606699[5]

Experiment(s):EBI-1147006

Protein

lacZ

PMID:16606699[5]

Experiment(s):EBI-1147006

Protein

rhsC

PMID:16606699[5]

Experiment(s):EBI-1147006

Protein

nadE

PMID:16606699[5]

Experiment(s):EBI-1147006
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

Periplasm

PMID:9298646[6]

EchoLocation:sbp

periplasm

From EcoCyc[3]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MNKWGVGLTF LLAATSVMAK DIQLLNVSYD PTRELYEQYN KAFSAHWKQQ TGDNVVIRQS
HGGSGKQATS VINGIEADVV TLALAYDVDA IAERGRIDKE WIKRLPDNSA PYTSTIVFLV
RKGNPKQIHD WNDLIKPGVS VITPNPKSSG GARWNYLAAW GYALHHNNND QAKAQDFVRA
LYKNVEVLDS GARGSTNTFV ERGIGDVLIA WENEALLAAN ELGKDKFEIV TPSESILAEP
TVSVVDKVVE KKGTKEVAEA YLKYLYSPEG QEIAAKNYYR PRDAEVAKKY ENAFPKLKLF
TIDEEFGGWT KAQKEHFANG GTFDQISKR
Length

329

Mol. Wt

36.659 kDa

pI

7.1 (calculated)

Extinction coefficient

64,860 (calc based on 14 Y, 8 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-19

UniProt Manual:Signal Peptides

UniProt:P0AG78

Domain

29..272

PF01547 Bacterial extracellular solute-binding protein

PMID:19920124[7]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=sbp taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131755

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948411

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012794

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AG78

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10929

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10929

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948411

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000918

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0922

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Link, AJ et al. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18 1259-313 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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