ryfA:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

RyfA RNA

Synonyms

small RNA[1], RyfA[2][1], PAIR3[2][1], Tp1[2][1]

Product description

small RNA[2]; RyfA small RNA[3]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
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Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties

Type

sRNA

Sequence 
GCGGCCCUUU CCGCCGUCUC GCAAACGGGC GCUGGCUUUA GGAAAGGAUG UUCCGUGGCC
GUAAAUGCAG GUGUUUCACA GCGCUUGCUA UCGCGGCAAU AUCGCCAGUG GUGCUGUCGU
GAUGCGGUCU UCGCAUGGAC CGCACAAUGA AGAUACGGUG CUUUUGUAUC GUACUUAUUG
UUUCUGGUGC GCUGUUAACC GAGGUAAAUA AUAACCGGAG UCUCUCCGGC GACAAUUUAC
UGGUGGUUAA CAACCUUCAG AGCAGCAAGU AAGCCCGAAU GCCGCCCUUU GGGCGGCAUA UUUU
Mol. Wt

97907.31

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References
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Structure
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Structures

<beststructure> gene=ryfA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:G0-8879

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002590

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4526

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0047260

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

Categories

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