ryeA:Gene Product(s)

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

RyeA RNA

Synonyms

small RNA[1], RyeA[2][1], SraC[2][1], PsrA8[2][1], Tkpe79[2][1], IS091[2][1]

Product description

small RNA that interacts with Hfq[2][3]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
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Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties

Type

sRNA

Sequence 
AAAGUCAGCG AAGGAAAUGC UUCUGGCUUU UAACAGAUAA AAAGAGACCG AACACGAUUC
CUGUAUUCGG UCCAGGGAAA UGGCUCUUGG GAGAGAGCCG UGCGCUAAAA GUUGGCAUUA
AUGCAGGCUU AGUUGCCUUG CCCUUUAAGA AUAGAUGACG ACGCCAGGUU UUCCAGUUUG
CGUGCAAAAU GGUCAAUAAA AAGCGUGGUG GUCAUCAGCU GAAAUGUUAA AAACCGCCCG
UUCUGGUGA
Mol. Wt

80606.37

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References
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Structure
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Structures

<beststructure> gene=ryeA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:G0-8865

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG31146

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002577

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4516

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0047252

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

Categories

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