rraB:Gene Product(s)

From EcoliWiki
Jump to: navigation, search

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YjgD

Synonyms

conserved protein[1], B4255[2][1], YjgD[2][1], RraB[3][1] , ECK4248, JW4212, yjgD, b4255

Product description

conserved hypothetical protein[2]; ribonuclease E inhibitor protein B[3]

Protein inhibitor of RNase E, modulates global mRNA abundance when overexpressed[4]

EC number (for enzymes)


edit table

<protect></protect>

Notes

Function

[back to top]


<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

aceF

PMID:15690043[5]

Experiment(s):EBI-878990

Protein

lpdA

PMID:15690043[5]

Experiment(s):EBI-878990

Protein

yniC

PMID:15690043[5]

Experiment(s):EBI-878990

Protein

gshA

PMID:15690043[5]

Experiment(s):EBI-893104

Protein

guaC

PMID:15690043[5]

Experiment(s):EBI-893104

Protein

frlA

PMID:15690043[5]

Experiment(s):EBI-893104

Protein

mpl

PMID:15690043[5]

Experiment(s):EBI-893104

Protein

secA

PMID:19402753[6]

MALDI(Z-score):18.877965

Protein

rplO

PMID:19402753[6]

MALDI(Z-score):26.609702

Protein

guaC

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

narG

PMID:19402753[6]

MALDI(Z-score):18.839421

Protein

deaD

PMID:19402753[6]

MALDI(Z-score):28.193175

Protein

rplB

PMID:19402753[6]

MALDI(Z-score):35.203346

Protein

rluB

PMID:19402753[6]

MALDI(Z-score):25.794222

Protein

yfiF

PMID:19402753[6]

MALDI(Z-score):30.655322

Protein

glpC

PMID:19402753[6]

MALDI(Z-score):39.118048

Protein

mnmG

PMID:19402753[6]

MALDI(Z-score):27.896714

Protein

mpl

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

gshA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

frlA

PMID:19402753[6]

LCMS(ID Probability):99.6

edit table

</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
edit table

<protect></protect>

Notes

Structure and Physical Properties

[back to top]


<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MANPEQLEEQ REETRLIIEE LLEDGSDPDA LYTIEHHLSA DDLETLEKAA VEAFKLGYEV
TDPEELEVED GDIVICCDIL SECALNADLI DAQVEQLMTL AEKFDVEYDG WGTYFEDPNG
EDGDDEDFVD EDDDGVRH
Length

138

Mol. Wt

15.602 kDa

pI

3.5 (calculated)

Extinction coefficient

11,460 - 11,835 (calc based on 4 Y, 1 W, and 3 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

9..113

PF06877 Protein of unknown function (DUF1260)

PMID:19920124[7]

edit table

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=rraB taxon=562,83333 </beststructure>

Models

View models at:

edit table
</protect>

Structure figures

<protect>

</protect>

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table

<protect></protect>

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16132077

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948773

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013936

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AF90

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7885

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12453

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948773

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004380

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2347

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]




References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  6. ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 6.11 6.12 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=rraB:Gene_Product(s)&oldid=1495988"