rpoZ:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

RpoZ

Synonyms

RNA polymerase, omega subunit[1], B3649[2][1], SpoS[2][1], RpoZ[2][1] , ECK3639, JW3624, spoS, b3649

Product description

RNA polymerase, ω subunit[2][3]

RNA polymerase subunit, omega subunit; assembly factor; chaperone-like function stabilizes RNAP[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003677

DNA binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00366

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006110

F

Seeded from EcoCyc (v14.0)

complete

GO:0003899

DNA-directed RNA polymerase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00366

F

Seeded from EcoCyc (v14.0)

complete

GO:0003899

DNA-directed RNA polymerase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003716

F

Seeded from EcoCyc (v14.0)

complete

GO:0003899

DNA-directed RNA polymerase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006110

F

Seeded from EcoCyc (v14.0)

complete

GO:0003899

DNA-directed RNA polymerase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:2.7.7.6

F

Seeded from EcoCyc (v14.0)

complete

GO:0003899

DNA-directed RNA polymerase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0240

F

Seeded from EcoCyc (v14.0)

complete

GO:0006350

transcription

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0804

P

Seeded from EcoCyc (v14.0)

complete

GO:0006351

transcription, DNA-dependent

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00366

P

Seeded from EcoCyc (v14.0)

complete

GO:0006351

transcription, DNA-dependent

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003716

P

Seeded from EcoCyc (v14.0)

complete

GO:0006351

transcription, DNA-dependent

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006110

P

Seeded from EcoCyc (v14.0)

complete

GO:0016740

transferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc (v14.0)

complete

GO:0016779

nucleotidyltransferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0548

F

Seeded from EcoCyc (v14.0)

complete

GO:0030880

RNA polymerase complex

PMID:2152188[5]

IMP: Inferred from Mutant Phenotype

C

Fig 5.

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

dnaK

PMID:16606699[6]

Experiment(s):EBI-1146407

Protein

rpoB

PMID:16606699[6]

Experiment(s):EBI-1146407

Protein

rhsA

PMID:16606699[6]

Experiment(s):EBI-1146407

Protein

nusA

PMID:15690043[7]

Experiment(s):EBI-879161, EBI-893117

Protein

nusG

PMID:15690043[7]

Experiment(s):EBI-879161, EBI-882858

Protein

rplB

PMID:15690043[7]

Experiment(s):EBI-879161

Protein

dnaK

PMID:15690043[7]

Experiment(s):EBI-879161

Protein

rpoA

PMID:15690043[7]

Experiment(s):EBI-879161, EBI-879354, EBI-883271

Protein

rpoB

PMID:15690043[7]

Experiment(s):EBI-879161, EBI-879304, EBI-882858, EBI-883170

Protein

rpoC

PMID:15690043[7]

Experiment(s):EBI-879161, EBI-879261, EBI-882858, EBI-883046

Protein

rpsB

PMID:15690043[7]

Experiment(s):EBI-879161

Protein

rpsG

PMID:15690043[7]

Experiment(s):EBI-879161

Protein

rpsJ

PMID:15690043[7]

Experiment(s):EBI-879161

Protein

rpsM

PMID:15690043[7]

Experiment(s):EBI-879161

Protein

spoT

PMID:15690043[7]

Experiment(s):EBI-879161

Protein

tig

PMID:15690043[7]

Experiment(s):EBI-879161

Protein

rapA

PMID:15690043[7]

Experiment(s):EBI-879161

Protein

rplL

PMID:15690043[7]

Experiment(s):EBI-882858

Protein

rplW

PMID:15690043[7]

Experiment(s):EBI-882858

Protein

rpsT

PMID:15690043[7]

Experiment(s):EBI-882858

Protein

thiG

PMID:15690043[7]

Experiment(s):EBI-882858

Protein

ygjI

PMID:15690043[7]

Experiment(s):EBI-882858

Protein

ykgC

PMID:15690043[7]

Experiment(s):EBI-882858

Protein

tig

PMID:19402753[8]

MALDI(Z-score):31.397743

Protein

thiG

PMID:19402753[8]

LCMS(ID Probability):99.6

Protein

rpsT

PMID:19402753[8]

LCMS(ID Probability):99.6

Protein

ygjI

PMID:19402753[8]

LCMS(ID Probability):99.6

Protein

ykgC

PMID:19402753[8]

LCMS(ID Probability):99.6

Protein

nusG

PMID:19402753[8]

LCMS(ID Probability):99.6 MALDI(Z-score):38.362047

Protein

rpoB

PMID:19402753[8]

LCMS(ID Probability):99.6 MALDI(Z-score):25.777742

Protein

rpoC

PMID:19402753[8]

LCMS(ID Probability):99.6 MALDI(Z-score):23.637460

Protein

rapA

PMID:19402753[8]

MALDI(Z-score):18.094045

Protein

rplL

PMID:19402753[8]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MARVTVQDAV EKIGNRFDLV LVAARRARQM QVGGKDPLVP EENDKTTVIA LREIEEGLIN
NQILDVRERQ EQQEQEAAEL QAVTAIAEGR R
Length

91

Mol. Wt

10.235 kDa

pI

4.7 (calculated)

Extinction coefficient

0 (calc based on 0 Y, 0 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

7..63

PF01192 RNA polymerase Rpb6

PMID:19920124[9]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=rpoZ taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131520

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948160

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011933

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A800

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10899

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10899

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948160

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000890

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0892

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Gentry, DR & Burgess, RR (1990) Overproduction and purification of the omega subunit of Escherichia coli RNA polymerase. Protein Expr. Purif. 1 81-6 PubMed
  6. ↑ 6.0 6.1 6.2 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  7. ↑ 7.00 7.01 7.02 7.03 7.04 7.05 7.06 7.07 7.08 7.09 7.10 7.11 7.12 7.13 7.14 7.15 7.16 7.17 7.18 7.19 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  8. ↑ 8.0 8.1 8.2 8.3 8.4 8.5 8.6 8.7 8.8 8.9 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  9. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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