rpiR:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

RpiR

Synonyms

AlsR[1][2], B4089[1][2], YjcY[1][2], alsR, ECK4082, JW4050, yjcY, b4089

Product description

Txnl repressor for als operon and rpiB[3]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003677

DNA binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0238

F

Seeded from EcoCyc (v14.0)

complete

GO:0003700

transcription factor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000281

F

Seeded from EcoCyc (v14.0)

complete

GO:0005529

sugar binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001347

F

Seeded from EcoCyc (v14.0)

complete

GO:0005975

carbohydrate metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001347

P

Seeded from EcoCyc (v14.0)

complete

GO:0016566

specific transcriptional repressor activity

PMID:9401019[4]

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc (v14.0)

complete

GO:0032582

negative regulation of gene-specific transcription

PMID:9401019[4]

IDA: Inferred from Direct Assay

P

Seeded from EcoCyc (v14.0)

complete

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Interactions

See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

wcaM

PMID:16606699[5]

Experiment(s):EBI-1147433

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1147433

Protein

slyD

PMID:16606699[5]

Experiment(s):EBI-1147433

Protein

cysK

PMID:16606699[5]

Experiment(s):EBI-1147433
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MASSIQGQEN VMSQSEFDSA LPNGIGLAPY LRMKQEGMTE NESRIVEWLL KPGNLSCAPA
IKDVAEALAV SEAMIVKVSK LLGFSGFRNL RSALEDYFSQ SEQVLPSELA FDEAPQDVVN
KVFNITLRTI MEGQSIVNVD EIHRAARFFY QARQRDLYGA GGSNAICADV QHKFLRIGVR
CQAYPDAHIM MMSASLLQEG DVVLVVTHSG RTSDVKAAVE LAKKNGAKII CITHSYHSPI
AKLADYIICS PAPETPLLGR NASARILQLT LLDAFFVSVA QLNIEQANIN MQKTGAIVDF
FSPGALK
Length

307

Mol. Wt

33.507 kDa

pI

6.3 (calculated)

Extinction coefficient

15,930 - 16,555 (calc based on 7 Y, 1 W, and 5 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

14..119

PF01418 Helix-turn-helix domain, rpiR family

PMID:19920124[6]

Domain

137..267

PF01380 SIS domain

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=rpiR taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111685

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948603

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013400

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0ACS7

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7821

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12459

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948603

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004319

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2353

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  2. ↑ 2.0 2.1 2.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  3. ↑
  4. ↑ 4.0 4.1 Kim, C et al. (1997) The D-allose operon of Escherichia coli K-12. J. Bacteriol. 179 7631-7 PubMed
  5. ↑ 5.0 5.1 5.2 5.3 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.0 6.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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