rpe:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

Rpe

Synonyms

D-ribulose-5-phosphate 3-epimerase[1], B3386[2][1], Dod[2][1], YhfD[2][1], Rpe[2][1] , dod, ECK3373, JW3349, yhfD, b3386

Product description

RIBULP3EPIM[2][3]

D-ribulose-5-phosphate 3-epimerase[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

Missing: evidence, reference

GO:0004750

ribulose-phosphate 3-epimerase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000056

F

Seeded from EcoCyc (v14.0)

complete

GO:0004750

ribulose-phosphate 3-epimerase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:5.1.3.1

F

Seeded from EcoCyc (v14.0)

complete

GO:0004750

ribulose-phosphate 3-epimerase activity

PMID:9729441[5]

IMP: Inferred from Mutant Phenotype

F

Table 2

complete

GO:0005975

carbohydrate metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000056

P

Seeded from EcoCyc (v14.0)

complete

GO:0005975

carbohydrate metabolic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0119

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011060

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013785

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

dnaN

PMID:15690043[6]

Experiment(s):EBI-886378, EBI-892838

Protein

dnaK

PMID:15690043[6]

Experiment(s):EBI-892838

Protein

eno

PMID:15690043[6]

Experiment(s):EBI-892838

Protein

hsdM

PMID:15690043[6]

Experiment(s):EBI-892838

Protein

selD

PMID:15690043[6]

Experiment(s):EBI-892838

Protein

trg

PMID:15690043[6]

Experiment(s):EBI-892838

Protein

ydaY

PMID:15690043[6]

Experiment(s):EBI-892838

Protein

yedD

PMID:15690043[6]

Experiment(s):EBI-892838

Protein

glcA

PMID:15690043[6]

Experiment(s):EBI-892838

Protein

frlD

PMID:15690043[6]

Experiment(s):EBI-892838

Protein

agaD

PMID:16606699[7]

Experiment(s):EBI-1145740

Protein

qseB

PMID:16606699[7]

Experiment(s):EBI-1145740

Protein

hsdM

PMID:19402753[8]

LCMS(ID Probability):99.0

Protein

dnaN

PMID:19402753[8]

LCMS(ID Probability):99.0 MALDI(Z-score):5.283719

Protein

eno

PMID:19402753[8]

LCMS(ID Probability):99.6

Protein

yedD

PMID:19402753[8]

LCMS(ID Probability):99.0

Protein

selD

PMID:19402753[8]

LCMS(ID Probability):99.0

Protein

trg

PMID:19402753[8]

LCMS(ID Probability):99.0

Protein

glcA

PMID:19402753[8]

LCMS(ID Probability):99.0

Protein

frlD

PMID:19402753[8]

LCMS(ID Probability):99.0

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKQYLIAPSI LSADFARLGE DTAKALAAGA DVVHFDVMDN HYVPNLTIGP MVLKSLRNYG
ITAPIDVHLM VKPVDRIVPD FAAAGASIIT FHPEASEHVD RTLQLIKENG CKAGLVFNPA
TPLSYLDYVM DKLDVILLMS VNPGFGGQSF IPQTLDKLRE VRRRIDESGF DIRLEVDGGV
KVNNIGEIAA AGADMFVAGS AIFDQPDYKK VIDEMRSELA KVSHE
Length

225

Mol. Wt

24.554 kDa

pI

5.0 (calculated)

Extinction coefficient

8,940 - 9,065 (calc based on 6 Y, 0 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

5..206

PF00834 Ribulose-phosphate 3 epimerase family

PMID:19920124[9]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=rpe taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131264

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947896

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011061

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AG07

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:M004

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11960

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947896

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004466

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1903

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Lyngstadaas, A et al. (1998) Impaired growth of an Escherichia coli rpe mutant lacking ribulose-5-phosphate epimerase activity. Biochim. Biophys. Acta 1381 319-30 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.8 6.9 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  7. ↑ 7.0 7.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  8. ↑ 8.0 8.1 8.2 8.3 8.4 8.5 8.6 8.7 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  9. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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