rnlA:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YfjN

Synonyms

CP4-57 prophage; RNase LS[1], B2630[2][1], YfjN[2][1], RnlA[2][1], Std[2][1] , ECK2626, JW2611, std, yfjN, b2630

Product description

CP4-57 prophage; RNase LS[2][3]

RNase LS, endoribonuclease, affects mRNA stability, CP4-57; putative defective prophage; target of phage T4 Dmd[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1143555
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MTIRSYKNLN LVRANIETES RQFIENKNYS IQSIGPMPGS RAGLRVVFTR PGVNLATVDI
FYNGDGSTTI QYLTGANRSL GQELADHLFE TINPAEFEQV NMVLQGFVET SVLPVLELSA
DESHIEFREH SRNAHTVVWK IISTSYQDEL TVSLHITTGK LQIQGRPLSC YRVFTFNLAA
LLDLQGLEKV LIRQEDGKAN IVQQEVARTY LQTVMADAYP HLHVTAEKLL VSGLCVKLAA
PDLPDYCMLL YPELRTIEGV LKSKMSGLGM PVQQPAGFGT YFDKPAAHYI LKPQFAATLR
PEQINIISTA YTFFNVERHS LFHMETVVDA SRMISDMARL MGKATRAWGI IKDLYIV
Length

357

Mol. Wt

40.061 kDa

pI

6.8 (calculated)

Extinction coefficient

31,860 - 32,235 (calc based on 14 Y, 2 W, and 3 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References
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Structure
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Structures

<beststructure> gene=rnlA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130548

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947107

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008659

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P52129

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7365

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13200

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947107

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003933

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2992

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

Categories

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