rnk:Gene Product(s)
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
Rnk |
|---|---|
| Synonyms |
regulator of nucleoside diphosphate kinase[1], B0610[2][1], Rnk[2][1] , ECK0603, JW0602, b0610 |
| Product description |
regulator of nucleoside diphosphate kinase[2][3] Regulator of nucleoside diphosphate kinase; suppresses Pseudomonas algR2[4] |
| EC number (for enzymes) |
|
| edit table |
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Notes
Function
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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0003677 |
DNA binding |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0003711 |
transcription elongation regulator activity |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0006355 |
regulation of transcription, DNA-dependent |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
rpsN |
Experiment(s):EBI-1137410 | ||
|
Protein |
zwf |
Experiment(s):EBI-1137410 | ||
|
Protein |
yibL |
Experiment(s):EBI-1137410 | ||
|
Protein |
uspG |
Experiment(s):EBI-1137410 | ||
|
Protein |
insL1 |
Experiment(s):EBI-1137410 | ||
|
Protein |
prs |
Experiment(s):EBI-1137410 | ||
|
Protein |
ftsL |
Experiment(s):EBI-1137410 | ||
|
Protein |
rplB |
Experiment(s):EBI-1137410 | ||
|
Protein |
helD |
Experiment(s):EBI-1137410 | ||
|
Protein |
nadE |
Experiment(s):EBI-1137410 | ||
|
Protein |
ftsX |
Experiment(s):EBI-1137410 | ||
|
Protein |
rplQ |
Experiment(s):EBI-1137410 | ||
|
Protein |
iscS |
Experiment(s):EBI-1137410 | ||
|
Protein |
spoT |
Experiment(s):EBI-1137410 | ||
|
Protein |
insC1 |
Experiment(s):EBI-1137410 | ||
|
Protein |
pldA |
Experiment(s):EBI-1137410 | ||
|
Protein |
rpsL |
Experiment(s):EBI-1137410 | ||
|
Protein |
fdnH |
Experiment(s):EBI-1137410 | ||
|
Protein |
dnaE |
Experiment(s):EBI-1137410 | ||
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Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
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Notes
Structure and Physical Properties
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Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MSRPTIIIND LDAERIDILL EQPAYAGLPI ADALNAELDR AQMCSPEEMP HDVVTMNSRV KFRNLSDGEV RVRTLVYPAK MTDSNTQLSV MAPVGAALLG LRVGDSIHWE LPGGVATHLE VLELEYQPEA AGDYLL |
| Length |
136 |
| Mol. Wt |
14.926 kDa |
| pI |
4.3 (calculated) |
| Extinction coefficient |
11,460 - 11,585 (calc based on 4 Y, 1 W, and 1 C residues) |
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Domains/Motifs/Modification Sites
|
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
<motif_map/> |
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Structure
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Structure figures<protect> | ||||||
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 5.16 5.17 5.18 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
- ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
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